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EBI Affiliated Course - ESGI Data Flow Workshop

Course Summary

Title: ESGI Data Flow Workshop 2012
Date: 7th - 8th February 2012
Venue: EMBL-EBI, Hinxton, Cambridge, CB10 1SD, UK
Organiser: Guy Cochrane and Sheila Plaister

Admin Support: Alison Barker
Registration Deadline: 20th January 2012 @ 12:00 (midday) GMT


 

Course Overview

This workshop will provide training covering submission and retrieval services provided by the EBI's European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena/) for raw and early analysis data from next generation nucleotide sequencing platforms. In addition, we will cover emerging technology for the efficient compression of these data. Students can expect to become familiar with submission and retrieval formats for both metadata and data, submission pipelines and data retrieval using browser and webservices methods, and the use of compressed formats in data processing and analysis. This workshop is supported by the European Sequencing and Genotyping Infrastructure project funded under the FP7 programme of the European Commission (ESGI; http://www.esgi-infrastructure.eu/).

Programme

Times Topic Trainer
Tuesday 7th February 2012
12:00-13:30 Registration and lunch
13:30-13:45 Welcome
13:45-14:15 SRA Introduction
14:15-14:40 SRA Browsing and Data retrieval
14:40-15:00 Secure EGA submissions
15:00-15:30 Sequence data compression
15:30-16:00 Tea/Coffee Break
16:00-17:30 Hands-on session I : retrieval
17:30-21:00 Workshop Dinner sponsored by ESGI
Wednesday 8th February 2012
09:00-09:30 SRA: Submissions : SRA Webin
09:30-10:00 SRA: Submissions : SRA REST
10:00-10:45 Hands-on session II : submission
10:45-11:15 Tea/Coffee Break
11:15-13:00 Hands-on session II : submission

Registration

Registration Fees £30

Registration
Please note that the registration fee includes:
* Workshop dinner on the 7th February sponsored by ESGI
* Meals at EBI (refreshments breaks and lunch)
* Course materials & USB stick
* Use of EBI IT Training Room computer during the 2 day course

All delegates will need to arrange and pay for their own travel to and from the course and accommodation if required on the night on 7th February. We recommend booking your accommodation at the Wellcome Trust Conference Centre. We are holding a number of rooms there until the 24th December so please book immediately to secure your room. Your credit card details will be required in order to secure the booking. Rooms are limited and are on a first come first serve basis, therefore we recommend booking early.

There will be a maximum of 30 participants on this course and registration is on a first come first serve basis. Registration will close on Friday 20th January 2012 @ 12:00 (midday) GMT.

To register for this workshop please use the following link (Items marked * are mandatory. Incomplete registrations will not be processed). You will need to pay by credit card as you submit your registration, therefore please have your card to hand.

Registration >>>

Additional Information

This course will take place in the EMBL-EBI IT Training room which has 40 computers set up with the relevant disk images required for this course.

We recommend participants who require any additional nights accommodation book at the Wellcome Trust Conference Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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