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EBI Affiliated Workshop - Quest for Orthologs Workshop 2011

Course Summary

Title: Quest for Orthologs Workshop 2011
Date: 17th - 19th June, 2011
Venue: Wellcome Trust Conference Centre, Hinxton, Cambridge, CB10 1SD, UK
Organiser:Christophe Dessimoz, Javier Herrero, Suzanna Lewis, David Roos, Erik Sonnhammer

Admin Support: Alison Barker
Registration Deadline: Friday 3rd June 2011 - 12 noon (GMT)

Sponsorship

We would like to acknowledge the generous support from ESF Programme in Functional Genomics.

Meeting Overview


The identification of orthologs, genes in different species that are evolutionarily the closest, has become a critical prerequisite for many research projects, including important medical/pharmaceutical applications. Efficient identification of orthologs remains a challenge, compounded by the lack of a ‘gold standard’ proteome set. This workshop will address these issues by bringing together leaders and junior researchers in the field with the aims of improving the newly available ‘gold standard’ dataset, evaluating alternate approaches to ortholog identification, improve interoperability among orthology databases, and improve orthology-based protein function inference.


Tentative Meeting Schedule

The meeting will be organised in two parts:
1. Classical format with talks (and, if required, posters)
2. Workshop sessions

The meeting starts on Fri 17th June with a lunch at noon and will finish on Sunday afternoon (17:00). We can use the James Watson Pavillion for the duration of the meeting as well as the loft rooms on Sunday for parallel sessions (workshops).

The current list of topics is:
● Genomic-scale datasets, and implications for orthology detection
● Methods for orthology detection
● Applications of orthology

and the workshop sessions we have identified are:
● Reference datasets and benchmarking
● Standardized formats
● Function assignments
● Handling Alternative Transcripts
● Strategies for assessing similarity
● Determination of functional ncRNA orthology

Programme

 

     
Times Topic  
Friday 17th June 2011
12:00 - 13.00
Lunch  
13.30 - 14:50
Session I 4 x 15 minute slots
15:00 - 16:00 Session II 3 x 15 minute slots
16:00 - 16:30 Tea/Coffee Break  
16:30 - 18:00 Session I 4 x 15 minute slots
18:00 - 18:30 Round Table discussion 30 minutes
19:00 - 21:00 Conference Dinner  
Saturday 18th June 2011
08:00 - 09:00 Breakfast  
09:00 - 10:30 Session I 4 x 15 minute slots
10:30 - 11:00 Tea/Coffee Break  
11:00 - 12:30 Session II 4 x 15 minute slots
12:30 - 14:00 Lunch  
14:00 - 15:30 Plenary Workshop Ref Genomes and Benchmarking
15:30 - 16:00 Tea/Coffee Break  
16:00 - 17:30 Plenary Workshop Ref Genomes and Benchmarking
17:30 - 18:00 Round Table discussion 30 minutes
19:00 - 21:00 Dinner  
Sunday 19th June 2011
08:00 - 09:00 Breakfast  
09:00 - 10:30 Parallel Workshops  
10.30 - 11:00 Tea/Coffee Break  
11:30 - 13.00 Parallel Workshops  
13.00 - 14.00 Lunch  
14.00 - 15.30 Parallel Workshops  
15:30 - 16.00 Wrap Up  
16.00 - 17:00 Tea/Coffee Break  

Confirmed Attendees:

 

Adrian Altenhoff ETH Zurich
Judith Blake The Jackson Laboratory
Brigitte Boeckmann Swiss Institute of Bioinformatics
Alan Bridge Swiss Institute of Bioinformatics
Elspeth Bruford HUGO Gene Nomenclature Committee (HGNC)
Mike Cherry Stanford University
Matthieu Conte Syngenta seeds
Durand Dannie Carnegie Mellon University
Ruchira Datta University of California, Berkeley
Christophe Dessimoz ETH Zurich
Jean-Baka Domelevo-Entfellner LIRMM 
Ingo Ebersberger CIBIV
Toni Gabaldón Centre for Genomic Regulation (CRG)
Michael Galperin NCBI, NLM, National Institutes of Health
Javier Herrero EMBL-EBI
Jacob Joseph Carnegie Mellon University
Tina Koestler CIBIV
Evgenia Kriventseva University of Geneva
Odile Lecompte IGBMC
Suzanna Lewis Lawrence Berkeley National Lab
Benjamin Linard IGBMC
Michael Livstone Princeton University
Maria Martin EMBL-EBI
Raja Mazumder Protein Information Resource
Vincent Miele CNRS
Matthieu Muffato EMBL-EBI
Thomas Paul University of Southern California
Marco Punta Wellcome Trust Sanger Institute
David   Roos University of Pennsylvania
Mathieu Rouard Bioversity International
Thomas Schmitt Stockholm Bioinformatics Center
Fabian  Schreiber Stockholm University
Alan Silva European Bioinformatics Institute
Kimmen Sjolander University of California Berkeley
Nives Skunca Institut Ruder Boskovic
Erik Sonnhammer Stockholm Bioinformatics Centre
Eleanor Stanley EMBL-EBI
Radek Szklarczyk Radboud University Nijmegen Medical Centre
Ikuo Uchiyama National Institute for Basic Biology
Michiel Van Bel Ghent University
Klaas Vandepoele VIB - Ghent University
Albert Vilella EMBL-EBI
Andrew Yates EMBL-EBI
Evgeny Zdobnov Univ Geneva

 

Registration

Registration fees:

Registration Academics -- No room : £200
Registration Academics -- Shared Twin room: £300
Registration Academics -- Singe room: £400

Registration Industry -- No room : £600
Registration Industry -- Shared Twin room: £700
Registration Industry -- Singe room: £800

The fees include all meals and refreshment breaks between Friday afternoon and Sunday afternoon. Accommodation is for 2 nights - Friday 17th until Sunday 19th June. Any additional nights will need to be booked and paid for directly with the Conference Centre.

Financial support: we might be able to help a limited number of participants unable to cover all their travel/registration expenses. If your participation is uncertain due to financial considerations, please contact one of the organisers directly.

You will need to pay by credit card as you submit your registration - therefore please have your card to hand.

To register for this workshop please use the following link (Items marked * are mandatory. Incomplete registrations will not be processed)

Register Here > > > >




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