Cath joined the EMBL-European Bioinformatics Institute in 2002 to develop the EMBL-EBI’s outreach programme, and extended her responsibilities to include user training in 2006. Her team now coordinates a wide-ranging portfolio of activities reaching tens of thousands of individuals each year. She co-chaired ELIXIR’s training workpackage, which developed a pan-European strategy to train the growing and diversifying users of Europe’s public-domain biological databases. She also works with the Innovative Medicines Initiative’s Education and Training projects to develop their joint strategy on course quality. Before joining EMBL-EBI, Cath spent a decade as an editor of scientific review journals, cutting her teeth with the Elsevier Trends Journals before launching Nature Reviews Cancer. A brief dalliance with medicine at the University of Oxford led her to seek solace in molecules in Cambridge, where she completed her PhD in biochemistry under the guidance of Robin Irvine.
Sarah has a BSc and MSc in Biomedical Sciences, followed by a PhD from Cranfield University. Over a 10 year academic career her research has focused on tumour biomarker characterisation and cell-surface interaction. Beyond research she took an active role in the provision of postgraduate taught courses for the University as Lecturer in Molecular Medicine, leading the development and direction of a number of MSc Courses including the MSc in Translational Medicine, the MSc in Molecular Medicine, and more recently acting as director for the MSc Programmes in Advanced Biosciences. She has lectured on a variety of biomedical techniques and topics, including ethics and governance of research.
Richard is the Scientific Training Officer (eLearning) for the Training Team at EMBL-EBI. He is responsible for monitoring and maintaining EMBL-EBI’s Train online eLearning portal and developing new online training courses in collaboration with subject-matter experts.
Richard has a BSc in Zoology and a PhD in the biology of ageing from University College London. Before joining the team, he worked at the Royal Society of Chemistry to develop eLearning resources and websites for chemistry students and teachers. Richard has also worked as an online editor for Faculty of 1000 and as a medical writer.
Tom Hancocks is a Scientific Training Officer (BioMedBridges) for the Outreach and Training Team at EMBL-EBI.
He studied Human Genetics at the University of Leeds and McMaster University in Hamilton, Ontario; before completing an MSc in Analytical Genomics at the University of Birmingham.
Tom has worked for the NHS in diagnostic genetics and in bioinformatics training for healthcare scientists and clinicians.
Katrina Costa is the Scientific Engagement Officer at EMBL-EBI. In this role, she manages EMBL-EBI's presence at international conferences, manages events that showcase EMBL-EBI to scientists, and promotes the training programme. Katrina gained her BSc in Biological Sciences from the University of Oxford and her MSc in Science Communication from Imperial College, London. She has worked in the Press team at Cancer Research UK and in the Media Office at the BBSRC. Katrina joined EMBL-EBI in 2009 as the Scientific Outreach Officer, working across a broad range of communications projects and publications.
Joseph Rossetto is a Web Developer in the Web development and Web production teams at EMBL-EBI. Joseph is involved in the development and maintenance of the main EMBL-EBI website and is developing the EBI Train online web pages.
Thomas Laurent is a Web Developer in the Web development and Web production teams at EMBL-EBI.
He is involved in the development and maintenance of the main EMBL-EBI website, EU web portals and the EBI Train online web site.
Francis divides his time between web design / development and user experience (UX) design.
He tries to make things less complicated for people to use.
Bren Vaughan is the Team Leader of the Web development team at EMBL-EBI where he is responsible for maintaining the EMBL-EBI website and supports teams throughout the organisation in a number of ways. The team maintains and provides access to core services such as document management, project documentation and issue tracking, source code control and user support.
The Web production team, led by Rodrigo Lopez, focuses on three major areas of service: developing and providing platforms for web services; maintaining web infrastructure; and providing robust and secure frameworks for deploying public bioinformatics services. The team maintains and develops the EBI search engine and job dispatcher framework as well as their corresponding SOAP/REST Web Services. Web production also provides access to core services for project management (document management, project documentation and issue tracking, source code control) and user support.
Rodrigo has a Vet. Med Degree from Oslo Vet. Hoyskole and NASAS Cand. Scient. Molecular Toxicology and Informatics 1987 from the University of Oslo. He has been at EMBL-EBI since 1995.
Gary is the outreach coordinator for the Protein Data Bank in Europe (PDBe). He is responsible for helping users with a broad range of backgrounds and interests to make the most of macromolecular structural data. Gary has a PhD is synthetic organic chemistry from the University of Warwick. Before joining the EMBL-EBI, he worked for over 10 years at the Cambridge Crystallographic Data Centre where he gained a wealth of experience in supporting software tools and data resources for pharmaceutical discovery, life science research and materials design.
Stephan is a PhD student based in the Cheminformatics and Metabolism team at the European Bioinformatics Institute. His research focuses on mass spectrometry data processing and analysis as well as metabolite identification in metabolomics. This work involves the development of new software and nodes for different platforms. He is also the current developer of the KNIME-CDK nodes in KNIME. Stephan Beisken graduated from the University of Applied Sciences NTA Isny, Germany, with a Diploma in pharmaceutical chemistry and received a Master of Research in bioinformatics from the University of Glasgow, UK.
Laura completed her undergraduate degree in Genetics (BSc first class hons) at the University of Nottingham. After dabbling in experimental work on a summer placement at the Wellcome Trust Sanger Institute, she found joy in using computer-based analyses to explore biological questions. Laura completed her PhD in Evolutionary Genetics at the University of Edinburgh’s Institute of Evolutionary Biology. There she used a bioinformatics approach to investigate patterns of codon usage in Archaea while under the supervision of Prof Paul Sharp FRS.
She also worked as a postdoc at the University of Manchester, where she explored molecular co-evolution among interacting proteins. Having obtained qualified teacher status (QTS), Laura joined EMBL-EBI as a Scientific Training Officer in 2012 and is responsible for the development and delivery of training courses.
Reza Salek was awarded his PhD in Molecular Biophysics and Biochemistry from University College London, UK. Currently, he is managing and coordinating a large EU infrastructure project on metabolomics standards COSMOS (Coordination of Standards in Metabolomics) as well MetaboLights, the first open-access, general-purpose metabolomics repository curation efforts. COSMOS aims to set and promote community standards that will make it easier to disseminate metabolomics data through life science e-infrastructures. In the past Reza Salek has worked as scientific investigator at the Medical Research Council HNR unit in the Lipid Signalling group. Reza Salek is also a research visitor and former research associate at the University of Cambridge, Biochemistry Department. In addition, he is member of the Cambridge Systems Biology Centre, Cambridge Neuroscience and Cambridge Cancer Centre. In the past he has been involved in large national and international consortiums and metabolomics projects on breast cancer biomarker discovery based on integrated NMR and mass spectrometry metabolomics (MetaCancer- www.metacancer-fp7.eu/), animal models and clinical trials on Type 2 diabetes (GSK) and animal models of neurological disorders (Babraham Institute) during his work at Cambridge University, gaining insight working both within academic and industrial environments. Reza is also the main organizer of the “EMBO Practical Course on Metabolomics Bioinformatics for Life Scientists” for 2013
Andrew studied Biochemistry at Cambridge before moving to York University for post-graduate studies in Bioinformatics and then Structural Bioinformatics, in particular working on the identification of distinctive features of protein structure. He then worked as a Bioinformatics specialist for BBSRC Bioscience IT Services before taking up his current position in the External Services team at the EBI where he provides training, support and documentation.
Tobias is a curator for the PRIDE team (2013), and previously a curator for the ArrayExpress team (2011). Before joining the EMBL-EBI, he studied a Bachelor's in Computer Science from the University of Manchester (2005), and later a Master's in BioHealth Informatics in the same department (2010) which involved collaboration with the KNH-Centre for Biomedical and Forensic Egyptology. Along the way, his working experience has included a few software companies, and in particular managing clinical trial data for AstraZeneca for translational informatics.
Adam has been a bioinformatician on the BioSamples Database since he joined EMBL-EBI in 2011, and is involved in data management, curation, and software development activities. Prior to EMBL-EBI, Adam completed his PhD and MRes (Bioinformatics) at the University of York, and his BSc in Genetics at the University of Nottingham.
Philip Rossiter is the Europe PMC Project Manager at EMBL-EBI. In this role, he is responsible for the delivery of the Europe PMC Funders’ Development Plan, as well as being committed to ensuring that the Europe PMC service is delivered to the highest standards. Philip has a degree in Engineering but has always worked in IT, originally as a programmer, then transitioning to project and programme management. Philip joined EMBL-EBI in December 2011, his previous employment includes Cancer Research UK, Amgen, Arup and Instron.
Denise joined the Ensembl Outreach team in September 2011 and has been delivering browser workshops, providing user support and creating/maintaining online documentation for the Ensembl and Ensembl Genomes projects since then. She got a PhD degree in Biochemistry (Universidade Federal de Minas Gerais, Belo Horizonte, Brazil), a post-doctoral training in Genetics (Australian National University, Canberra, Australia) and was a Research Associate in Human Evolution at the Wellcome Trust Sanger Institute (Hinxton, UK). She has also worked as a Senior Computer Biologist in the Havana team on the Gencode, Eucomm and Pig Genome projects before joining the EBI.
Gareth Owen is a member of the Cheminformatics and Metabolism group at the EBI, where he works as curator and project manager for the ChEBI database. Gareth obtained his PhD in synthetic organic chemistry from Leeds University. He continued practising bench chemistry in a collaborative project with the Biotechnology unit at Sheffield University, synthesising radioactive intermediates that were used as part of an effort to produce morphine from microorganisms. He subsequently moved into the area of cheminformatics, designing and building both reaction and molecule databases for ORAC Ltd and later for Synopsys and Accelrys, before joining EMBL-EBI in 2010.
Hubert Denise is a bioinformatician in the Metagenomics group at the European Bioinformatics Institute in Cambridge, UK. He joined EMBL-EBI in 2012. He has a PhD in Molecular Biology and Biochemistry and has been involved in several research projects in the areas of infectious diseases and comparative genomics.
Ken Haug joined the EBI in 2009 and is currently a Project Manager and Software Engineer in the Cheminformatics and Metabolism group. Ken studied IT in Oslo before joining Oracle in Norway as an IT Manager and later a Solution Architect for Oracle Consulting. 10 years ago Ken moved to the UK and worked for the next 6 years for an Oracle-focused consultancy in London/Reading, working on various projects as a customer-facing Project Manager and Consultant.
Emily is an outreach officer for Ensembl: she is responsible for teaching workshops, creating training materials and answering helpdesk queries for the resource. Before working at the EBI, Emily did her PhD in molecular biology at the MRC Human Genetics Unit in Edinburgh, then worked for the University of Edinburgh's SCI-FUN group, touring Scottish secondary schools with an interactive science roadshow. She has been at the EBI since September 2012.
Nicolas Le Novère is Group Leader at the Babraham Institute and the European Bioinformatics Institute. He studied Molecular Biology and Biochemistry at École Normale Supérieure, Evolution at University Paris XI, Biophysics and Pharmacology at University Paris VI. After his PhD thesis on the structure and function of neuronal nicotinic receptors with Jean-Pierre Changeux at the Pasteur Institute, he pursued post doctoral training in modelling bacterial chemotaxis with Dennis Bray at the University of Cambridge (UK). His two main scientific interests are now Computational Systems Biology and the study of neuronal function. Beside modelling, he is interested in developing tools, resources, standards and ontologies for Systems Biology.
Camille Laibe is the Coordinator of the BioModels.net team, which is responsible for developing and maintaining resources and services such as BioModels Database, the MIRIAM Registry, Identifiers.org and the Systems Biology Ontology. Camille joined EMBL-EBI in 2006 as a Software Engineer. Before this, he studied Computational Sciences and Bioinformatics at Blaise Pascal University, France.
Rafael Alcántara studied Biochemistry and Molecular Biology at the Universidad Autónoma de Madrid (Spain), where he obtained his PhD in 1993 with a thesis on a high-affinity glycine transporter for the central nervous system. After this he worked as a laboratory analyst in the pharmacy and chemistry industry. Since Rafael has always found computers and programming languages appealing - he studied them in his spare time - he finally switched careers in 2001 to work as a Java Developer. Since 2005 he has worked as a Software Engineer in the Cheminformatics and Metabolism Group at EMBL-EBI.
Steve Jupe is the Biology Coordinator for the Reactome project in the Proteomics Services team at the European Bioinformatics Institute. His role is primarily the identification and addition of new topics to Reactome, particularly in the areas of immune signalling and haemostasis. Steve has a BSc in Biology and for his PhD he researched the growth-regulating activity of the plant hormones gibberellin and ethylene at UCW Aberystwyth, obtaining his PhD in 1989. This was followed by postdoctoral positions at the Institute for Arable Crops Research, Rothamsted and Long Ashton, where he trained in molecular biology as part of the AFRC plant molecular biology initiative. He worked on plant-pathogen interactions at Royal Holloway, University of London before moving away from the lab in 1996 to join the Bioinformatics group at SmithKline Beecham, now GlaxoSmithKline, where he worked on numerous drug discovery projects and maintained a database of GPCRs. Steve joined the Reactome group in 2009.
Amy studied Human Genetics at the University of Nottingham for her bachelor degree. She then went on to do a PhD at the MRC Clinical Sciences Centre / Imperial College London, working on the epigenetic control of X-chromosome inactivation in mouse early development. The project was split 50:50 into wet-lab and bioinformatics, this is when Amy first got interested in bioinformatics. After a short postdoc in the same lab, Amy returned to study at Imperial, this time specialising in Bioinformatics & Systems Biology MSc. The MSc course helped Amy move laterally from wet-lab to bioinformatics. Before joining EMBL-EBI, Amy was a senior bioinformatician / developer for nearly three years in the Ensembl GeneBuild team at the Wellcome Trust Sanger Institute.
Paul Kersey did his PhD at the University of Edinburgh on the molecular biology and genetics of the cell cycle of fission yeast, and subsequently worked at the MRC Human Genetics Unit. Since 1999, Paul has worked at EMBL-EBI on various databases, including UniProt, GOA, Integr8, IPI, and Genome Reviews. He currently leads the Ensembl Genomes team, which provides services for genome-scale data from non-vertebrate species, primarily through the use of the Ensembl software platform. The team integrates data from across the taxonomic space, and collaborates closely with particular groups involved in genome annotation and the development of domain-specific resources.
Lisa works primarily with the DGVa. She spent her early career working in Information Technology as an Analyst/Programmer in the pharmaceutical industry before returning to education to obtain a PhD in Neurogenetics from University College London, UK. She carried out postdoctoral research at the Mayo Clinic, Jacksonville, USA and the Genome Institute of Singapore, exploring genetic variation in Parkinson's disease and related neurological disorders. At EMBL-EBI, Lisa helped to develop Version 2 of the DGVa system and also oversees data submissions from researchers, curation of data from published literature and data integration with internal and external resources.
Pablo Porras got his PhD in 2006 in the University of Córdoba, Spain, having done research about trans-membrane protein translocation and redox homeostasis. After that, he moved to Berlin to work in the Neuroproteomics group of the Max Delbrueck Center, getting involved in projects dealing with interactomics, neurodegenerative diseases and the ubiquitin-proteasome system. During this postdoc, he faced the problem of how to represent and analyze molecular interactions data. This experience proved to be of great value once he joined the EBI to work as a scientific curator in the molecular interactions database IntAct in 2011.
Martyn F. Symmons received his PhD in protein crystallography from Birkbeck College University of London in 2004. This was for his structural solution of the first known PNPase which is a key bacterial and mitochondrial RNase controlling virulence and cell senescence. He was then awarded an Oppenheimer Research Fellowship at the University of Cambridge to work on bacterial antibiotic-efflux pumps in the Department of Pathology. He is currently a Curator in the PDBe team at EBI. In his spare time he continues to develop methods for assembling macromolecules from distance restraint data. Most recently he applied FRET restraints to assemble the core 5'UTR region of HIV-1 genomic RNA.
Aleksandras Gutmanas defended his PhD in biophysics with emphasis on Nuclear Magnetic Resonance (NMR) Spectroscopy and Molecular Dynamics Simulations in 2003 at the Dept. of Biochemistry and the Swedish NMR Centre, Gothenburg University, Sweden. He then moved on as a postdoc and staff scientist in the group of Dr. C. H. Arrowsmith, Toronto, Canada, part of the Northeast Structural Genomics Consortium (NESG). Since June 2010, he joined the PDBe group at EBI as NMR Project Leader. His interest is in NMR Spectroscopy, Macromolecular structures and structure validation.
Gerard Kleywegt received his PhD in Chemistry from the University of Utrecht (The Netherlands) in 1991. After 6 months with a California-based software company he moved to the University of Uppsala (Sweden) to do post-doctoral research in the laboratory of Alwyn Jones. He became an independent investigator in 1996 and played a pivotal role in the Swedish Structural Biology Network (SBNet) for more than a decade, first as its coordinator and later as its programme director. He was appointed Professor of Structural Molecular Biology in 2009. In the same year, he moved to Cambridge and joined EMBL-EBI as Head of the Protein Data Bank in Europe (PDBe).
Rebecca Foulger is a Senior Scientific Curator for the Gene Ontology (GO) project at the EBI. After studying for a degree in Biochemistry and Genetics at the University of Nottingham, she completed a PhD at the University of Kent, investigating how insulin receptor signalling is involved in size control in Drosophila. Her career in biocuration began as a GO Annotator at FlyBase, University of Cambridge, and subsequently as a UniProt Database Curator at the EBI. In her current position, she works as part of a team that edits the Gene Ontologies.
Rachael Huntley is the project leader for the UniProt-Gene Ontology Annotation (UniProt-GOA) project at EMBL-EBI. She studied for a PhD in Plant Biochemistry at the University of Cambridge, working on plant growth hormones in Oil Palm. She completed post-doctoral studies into the regulation of the plant cell cycle by D-type cyclins and the contribution of the pinhead gene to growth of the Arabidopsis shoot apical meristem. In her current position at the EBI she manages UniProt's Gene Ontology Annotation project, which is responsible for contributing and maintaining GO annotations for proteins in UniProt. She is also involved with teaching GO to both curators and researchers.
Guy Cochrane received his PhD in cancer cell and molecular biology from the University of East Anglia in 1999 and carried out postdoctoral work in the molecular biology of photoreception at the University of Cambridge prior to joining EMBL-EBI. Guy is now the Team Leader for the European Nucleotide Archive (ENA). Under Guy's leadership, the team have launched important new services, such as the Sequence Read Archive for raw data from next generation sequencing platforms and the CRAMtools sequence data compression platform. His other work invovles editing for several journals and meetings, and he has been involved in standardisation activities in many areas of bioinformatics.
Sandra Orchard is the Proteomics Services Team Coordinator working on protein annotation within the PANDA team. She is responsible for the curation standards within the IntAct Molecular Interaction database, as well as contributing to the annotation of the UniProtKB, InterPro and GOA databases. She also applies her experience to provide hands-on training in several resources, including UniProtKB, InterPro, IntAct and Reactome.
Louisa Bellis is the Chemical Content Curator for the ChEMBL group at the European Bioinformatics Institute. Louisa is also responsible for coordinating the outreach within the ChEMBL group. After completing a degree in chemistry with pharmaceutical and forensic Science, Louisa went on to study for a PhD in pharmacology at the University of Bradford. Her PhD was focused on the development of potential new drugs for the treatment of bladder cancer. Following this and prior to joining the EBI in 2009, Louisa worked for a not-for-profit company, training users on their drug toxicity and metabolism prediction software.
John Overington is the Team Leader for the computational Chemical Biology team at the European Bioinformatics Institute in Cambridge, UK. He studied for a PhD in Crystallography at Birkbeck College, University of London in 1991, working of protein modelling and sequence template bioinformatic methods development. Since this time John has held a number of positions in large Pharma and Biotech sectors prior to joining the EBI in 2008.
Joanna Argasinska completed her PhD in the Department of Biochemistry, University of Cambridge in 2004. She studied proteins controlling translation of stored maternal mRNAs during Xenopus oogenesis in Dr Standart's laboratory. She then joined Prof Smith group at the Gurdon Institute, Cambridge to study functions of transcription factors in Xenopusdevelopment. After working for a Cambridge-based biotech company, she joined the Training Group at EBI for an intership working on Train Online.
Alex Mitchell is curation co-ordinator for the InterPro database at the European Bioinformatics Institute in Cambridge, UK. He joined EMBL-EBI in 2011. He has a DPhil in pharmacology and has over 10 years' experience in protein sequence analysis and classification.
Amaia Sangrador is a curator for InterPro at the European Bioinformatics Institute in Cambridge, UK. She joined EMBL-EBI in 2010. She has a PhD in Molecular Biology and has been involved in several research projects in the areas of immunology and comparative genomics.
Gabriella Rustici is the Research and Training Coordinator in the Functional Genomics Group at the European Bioinformatics Institute in Cambridge, UK. She earned her PhD in Genetics from Cambridge University in 2004, working on transcription profiling of the fission yeast cell cycle, and has since been involved in the analysis of functional genomics data.
Giulietta is the outreach project leader for the Ensembl at EMBL’s European Bionformatics Institute (EBI). The Ensembl project freely provides high quality annotation such as genes, sequence variation, and whole genome alignments across mainly vertebrate genomes. She leads a small team that organises and delivers training courses worldwide, and supports scientific communication about the project.
Before she started working with the Ensembl project in 2006, she obtained her PhD in Susan Marqusee's lab at UC Berkeley in 2002. She 'hopped the pond' to carry out postdoctoral research in biochemical studies of Myosin VI at the MRC-LMB in Cambridge, UK (2002-2006).
Michele Magrane is the curation coordinator for the UniProt group at EMBL-EBI. She studied at University College Dublin and joined the group in 1997, specialising in curation of mammalian proteins. She oversees the running of the EMBL-EBI UniProt curation group with responsibility for activities such as quality control, curator training and documentation.
Emma Hastings is curator in the Functional Genomics Group at the European Bioinformatics Institute in Cambridge, UK. She earned her M.Sc. in Bioinformatics from Dublin City University (DCU) in 2007.
Phil is a Ph.D student in Kathryn Lilley's lab at the Cambridge Centre for Proteomics, in the University of Cambridge Department of Biochemistry.
Mindi Sehra is the Scientific Training Officer (eLearning) for the Outreach and Training Team at EMBL-EBI. Mindi is responsible for expanding and consolidating the EBI’s range of online training materials and monitoring and maintaining the portal, which includes investigating ways to exploit electronic technologies. Mindi completed a Genetics Degree at Sheffield University before moving into genome analysis at the Wellcome Trust Sanger Institute. She completed a MSc in Medical Genetics and Immunology at Brunel University, her thesis on the Swine Leukocyte Antigen secured her a position in the Human and Vertebrate Annotation and Analysis group as a computer biologist. She then joined the UniProt team at the EBI as a protein curator working on automatic and manual annotation.
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