Glossary

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.gpr files
1
1000 genomes project
4
4DXpress
a
accession number
Active site
Affinity purification mass spectrometry
Affymetrix
o
orthologue
a
Affymetrix arrays
Affymetrix probe ID
Alpha helix
Alpha-hemolysin
ambiguity code
Amide
Amino acid
Anabolic
Analyte
Analytes
Annotation
ANOVA
Application programming interface
ArrayExpress
ArrayExpress Archive
arthropod
Aspera
Assay
Atf1
Automatic annotation
Average Linkage
b
Bacteriophage
BAM
Base pair
Benzothiophene
Beta strand
Beta-barrel pore
Binding site
Bioconductor
Biomacromolecules
Biomarker
BioMaterial Characteristics
BioModels Database
BioPAX
BioSource (or Sample)
Biotechnological invention
BLAST
BLAT
BLOSUM matrices
Boosting terms
Box plot
c
C-terminus
Cap Analysis Gene Expression
Capillary sequencing technology
CAS
Catabolic
CATH
CCDS
CCP4mg
CDS
CellML
ChEBI
ChEMBL
Child term
Chinese Biological Abstracts
ChIP-chip
ChIP-Sequencing
chordate
Christmas Factor
Chromatin immunoprecipitation
chunked transfer encoding
cisRED
Citeseer
CLUSTAL
Clustering
Co-Immunoprecipitation
Co-occurrence
Coenzyme
Cofactor
Comparative genomic hybridisation
Complete Linkage
Computational model
Computationally infer
Confidence intervals
Confocal laser scanner
Consequence type
Conservation score
Conserved site
Constrained elements
Contigs
Controlled vocabulary
Copy number variations
Correlation-based distance or Pearson correlation
Correspondance analysis (COA)
COSMIC
CpG islands
Cross-reference
CSS
CTCF
curation
curator
d
DALI
DAS
Dasty
Data class
data matrices
data warehouse
database dumps
database schema
DbClustal
dbSNP
DECIPHER
Dendrogram
Density histogram
Derivatisation
DGVa
dicots
dictyBase
Differentially expressed
DIGE
Digital Object Identifier
Dimer
disambiguated
Distance measure
Distribution plot
Disulphide bridge
diTag
DNA probe
DNase 1
Domain
dot plot
e
E-value
EC number
EGA
Elute
EMBL format
EMBL Release
EMBL-Bank
EMBL-WGS
ENCODE
Ensembl
Ensembl Compara
Ensembl Genomes
Ensembl release
Entrez Gene
Entry Version
Ephb3
Epistasis
ESPACE® ACCESS
EST library
Euclidean distance
Europe PubMed Central
European Nucleotide Archive
European Patent Office (EPO)
exon
Experiment
Experiment accession number
Experimental factor
Experimental Factor Ontology
Expressed sequence tag
Expression Atlas
Expression-profiling
Extracellular
Extract
f
FASTA
FASTQ
Filtering
flat files
FlyBase
Fragment Ion Spectra
Fugu
Functional genomics
Fuzzy searches
g
gap penalty
GCRMA
GENCODE
gene
Gene Annotation
Gene association file
gene expression
Gene Expression Atlas
Gene expression atlas
Gene expression profile
Gene ontology
gene regulation
Gene tree
Gene3D
Genomic assembly
genomic structural variation
GERP score
global alignment
GlobalPat CD/DVD
Glycolysis
GO evidence code
GO Slim
GOA
GPCRs
GrainGenes
GVF
GWAS
h
H-Invitational Database
HAMAP
HapMap
hash table
Havana
Heatmap
HeLa
Heterodimeric
Heterosis
heuristic
heuristics
HGMD
HGNC
Hidden Markov model
Hierarchical Clustering
high throughput sequencing
High-throughput technologies
Histone methylation
hit pairs
Homology modelling
HTML
HUGO
HUGO names
HUPO-PSI
Hybridisation
Hydrogen Bond
i
IC50
ICD-10
iHOP
IMEx
IMEx Consortium
IMGT/HLA
Implemented Patent Classification (IPC)
InChI key
Information extraction
Information extraction module
Information retrieval
IntAct
IntEnz
interactome
intermediate compounds
International Patent Classification (IPC)
Interolog
InterPro
InterProScan
Intron
IPI
Issue Date
j
JalView
JME molecular editor tool
Jmol
Jmol
JPO
k
Kaposi’s Sarcoma
Karlin-Altschul statistics
Knockout
l
Labelled extract
LASTz
LC-MS
Leukemia
Leukotoxin
Li & Wong
Ligand
Linkage Disequilibrium
Lipid
Lipinski's rule of five
local alignment
Lookup table
Lucene
m
MACiE
Macromolecular Structure Database
MAGE-ML
MAGE-TAB
Manual annotation
manually infer
MapViewer
Mascot dat
Mass spectrometer output files
Mass spectrometry
Mass-to-charge
Medline
MedlinePlus
MeSH
Meta-analytical
Metabolism
Metadata
Metagenome
Metaphase
Metatranscriptomics
Metazoa
Methylation
MIAME
MIAMExpress
Microarray
MINSEQE
MIRIAM
miRNA
Mobile phase
monocot
Monomer
Monomer
morphology
Motif
MSD
MSDfold
Multimeric
MView
MySQL
mzIdentML
mzML
n
N-terminus
Named entity recognition (NER)
Natural language processing
NCBI Map Viewer
NCBI Taxonomy
Needleman-Wunsch algorithm
Next generation sequencing
Nfkbia
NHGRI
non-chordate
Normalisation
Normalisation methods
Notch Signalling Pathway
o
Octave
oligo probe
Oligonucleotide
OMIM
One- and two-channel experiments
Ontology
Open Access
Open Biomedical Ontologies
open reading frame
Operators
Optimal alignment
Oracle
p
p-value
PAM matrices
PANTHER
Panton valentine leukotoxin
paralogue
Partitioning clustering
Pattern
PDB
PDBe
PDBSum
Peak list
Perfect match (PM)
Perl
Pfam
Pharmacogenomics
Phytopathogen
PIR-PSD
PIRSF
Pleiotropy
PMID
Pol 1
Polymer
Polymorphism
Polyphyrin ring
position-specific score matrix
Positive Selection
Post translational modification
Pre-processing
PRIDE
PRIDE XML
Primary Accession Number
Principal Component Analysis (PCA)
Principle component analysis
PRINTS
Probe
Probe intensity
Processed data
Processed identification results
ProDom
Profiles
Promoter elements
PROSITE
Prosthetic group
Protein domain
Protein family
Protein Identifier
Protein repeat
Protein signature
Protein/peptide identifications
Protein–protein interaction
Proteome
Proteomics
Proximity searches
PSI-BLAST
PSI-MI ontology
PSI-MITAB
PSICQUIC
PubMed
Pymol
Pyrosequencing
q
Q-score
Quarternary structure
Quips
r
Ramachandran Plot
Range searches
Rasmol
Raw data
Reactome
Reactome Pathway Browser
Reference sequence
RefSeq
regular expression
Regulatory features
relational database
Resequencing
RESID
REST
Rfam
Rhea
Rho-independent termination
RMA
RMSD
RNA-Seq
rRNA
s
Saa4
Salt bridges
SAM
Sample
SARA
SciLab
SCOP
SDF
Search engine output files
Secondary accession number
Secondary Accession Number
Secondary structure
SEG filter
Selected reaction monitoring
Sequence Read Archive
Sequence Version
sequence-based search
Servlet
Side chain
signal transduction
Single Linkage
single nucleotide polymorphism
Small molecules
SMART
Smith–Waterman algorithm
SNPs
SOAP
Sonication
Spinocerebellar ataxia type 1
SRS
SSAHA
Standard deviation
Standard flowgram format
Stationary phase
Structural Genomics
Sty1
Subcellular
substitution matrix
Superfamily
Swiss-Prot
Sym.ID
Synonym
Synteny
Systems Biology Graphical Notation
Systems Biology Markup Language
t
t-test
Tab2MAGE
Tandem affinity purification
Tandem-MS
Taxonomic divisions
Tetraodon
Text mining
text-based search
TIGRFAM
Tiling arrays
Tiling microarrays
Toxicogenomics
Trace Archive
Transcriptome
Transcriptomics
Transformation
Translation
Trimeric protein
tRNA
tRNA cloverleaf
TROME database
Two-hybrid system
u
UCSC genome browser
UK PubMedCentral
UniMES
UniParc
UniProt
UniProt Knowledgebase
UniProt-GOA
UniProtKB
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
UniRef
Uracil
USPTO
UTR
v
Validation status
VCML
VectorBase
VEGA
VISTA enhancer
w
Web Services
Web Services Description Language
WormBase
x
X!Tandem
X-ray crystallography
XML
XPPAUT
y
Yeast two hybrid
m
Metabolomics