For more information on how to use PRIDE, see the PRIDE Archive Help Overview.
- There is a more detailed course in Train online about how to do ProteomeXchange submissions via PRIDE
If you have any questions about PRIDE, email the PRIDE support team
Vizcaíno, J.A., Deutsch, E.W., Wang, R. et al. (2014). ProteomeXchange provides globally co-ordinated proteomics data submission and dissemination. Nature Biotechnol. 32(3): 223-226.
Vizcaíno, J.A., Côté, R.G., Csordas, A. et al. (2013). The Proteomics Identifications (PRIDE) database and associated tools: status in 2013. Nucleic Acids Res. 41(D1):D1063-9.
Wang, R., Fabregat, A., Rios, D. et al. (2012). PRIDE Inspector: a tool to visualize and validate MS proteomics data. Nat Biotechnol. 30(2):135-7.
Côté, R.G., Griss, J., Dianes, J.A. et al. (2012). The Proteomics IDEntifications (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium. Mol Cell Proteomics 11:1682-1689.
Côté, R.G., Jones, P., Martens, L. et al. (2007). The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. BMC Bioinformatics. 8:401.
The PRIDE team is funded at present by the Wellcome Trust [grant number WT101477MA], the EU FP7 grants ‘ProteomeXchange’ [grant number 260558], and ‘PRIME-XS’ [grant number 262067], the BBRSC 'PROCESS' grant [reference BB/K01997X/1] and EMBL core funding.
In the recent past PRIDE has also been funded in the past by the Wellcome Trust [grant number WT085949MA] EU grant ‘LipidomicNet’ [grant number 202272], and the BBSRC grant ‘PRIDE Converter’ [reference BB/I024204/1].