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References

Vizcaíno, J.A., Deutsch, E.W., Wang, R. et al. (2014). ProteomeXchange provides globally co-ordinated proteomics data submission and dissemination. Nature Biotechnol. 32(3): 223-226.

Vizcaíno, J.A., Côté, R.G., Csordas, A. et al. (2013). The Proteomics Identifications (PRIDE) database and associated tools: status in 2013. Nucleic Acids Res. 41(D1):D1063-9. 

Wang, R., Fabregat, A., Rios, D. et al. (2012). PRIDE Inspector: a tool to visualize and validate MS proteomics data. Nat Biotechnol. 30(2):135-7.

Côté, R.G., Griss, J., Dianes, J.A. et al. (2012). The Proteomics IDEntifications (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortiumMol Cell Proteomics 11:1682-1689. 

Côté, R.G., Jones, P., Martens, L. et al. (2007). The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. BMC Bioinformatics. 8:401. 

Collaborators

PRIDE was originally developed through a collaboration between the EMBL-EBI
Ghent University in Belgium and the University of Manchester in the UK.

Funding

The PRIDE team is funded at present by the Wellcome Trust [grant number WT101477MA], the EU FP7 grants ‘ProteomeXchange’ [grant number 260558], and ‘PRIME-XS’ [grant number 262067], the BBRSC 'PROCESS' grant [reference BB/K01997X/1] and EMBL core funding. 

In the recent past PRIDE has also been funded in the past by the Wellcome Trust [grant number WT085949MA] EU grant ‘LipidomicNet’ [grant number 202272], and the BBSRC grant ‘PRIDE Converter’ [reference BB/I024204/1].