Exercise

Exercise 4b

Retrieve all coding TranscriptVariationAlleles for transcript ENST00000001008 in human and get for each TVA:

  • Allele string
  • Codon change
  • Amino acid change
  • SIFT and PolyPhen predictions*
HINTWe are only interested in information for the alternate allele.
You need to fetch TranscriptVariation objects first.

*if information exists

 

AnswerAnja explains the answers to these questions in this 2 min video. You can also download her sample script and expected output.