This exercise allows you to do some basic analysis of ChIP-seq data. You will align ChIP-seq data to the mouse genome using Bowtie, then find immuno-enriched areas using the peak caller MACS. You will visualise the data in a genome browser and perform annotation and motif analysis on the predicted binding regions. This task takes 1.5 to 2 hours.
You will need to install the following programmes and commands on your computer in order to carry out this practical: