Raw data can be accessed from the ‘Sample Overview’ or the ‘Sample Analysis’ pages. Once you have clicked the link for submitted nucleotide reads, you are re-directed to the ENA website where a range of download options are provided: FTP, Aspera, Galaxy or ENA_downloader (Figure 3).
Processed nucleotide reads and predicted coding sequence (CDS) - both in FASTA format; InterPro matches (in tab-separated format); GO term annotation result files (in comma-separated format) and predicted CDS with InterPro matches (in FASTA format) can also be downloaded from the 'Sample Analysis' page (see Figure 2d, in tab 4).
Figure 3 ENA page providing access to information about the study (labelled 'project' on the EBI Metagenomics Resource) and samples. It also offers options for downloading the data.