Train online courses
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This course will show you how to search, retrieve and interpret data from ArrayExpress, a repository of data from functional genomics experiments. ArrayExpress allows you to search and download this data.
Beginner -
This course will show you how to search, retrieve and interpret data from the Gene Expression Atlas (the 'Atlas'). The Atlas allows you to search and analyse gene expression patterns, and to run broader exploratory searches, to identify interesting correlations between differentially expressed genes and biological conditions of interest.
Beginner2 hours -
This quick tour provides a brief introduction to the EBI's functional genomics resource: ArrayExpress. To learn more, see the full courses on the Expression Atlas and ArrayExpress.
Beginner -
The aim of this course is to introduce the MicroArray Gene Expression Tabular (MAGE-TAB) format and to familiarise users with this format as a route for submitting functional genomics data to ArrayExpress.
Beginner1 hour -
Introduction to structural biology and an introduction to resources at EBI related to this field
Beginner -
This quick tour provides a brief introduction to BioModels Database, EMBL-EBI's repository of mathematical models of biological interest.
Beginner0.5 hour -
This quick tour provides a brief introduction to ChEBI, the EBI's Chemical Entities of Biological Interest database, which focuses on 'small' chemical compounds.
Beginner0.5 hour -
This quick tour provides a brief introduction to ChEMBL, the EBI's chemogenomics resource.
Beginner0.5 hour -
This quick tour provides a brief introduction to the DGVa, the EBI's Database of Genomic Variants archive.
Beginner -
This quick tour provides a brief introduction to the EBI Metagenomics resource, for archiving, analysing and integrating metagenomics data.
Beginner -
Here you will find a collection of video lectures from the 'Hands on training in Next-Generation Sequencing' course that took place at EMBL-EBI on 12-14 March 2012.
The workshop provides an introduction to Next Generation Sequencing (NGS) and addresses how to interpret the data and how the analysis is applied in Genomics.
Beginner> 3 hours -
Here you will find a collection of materials including videos of lectures from the 'EMBO Practical Course on Analysis of High-Throughput Sequencing Data' that took place at EMBL-EBI on 23-29 October 2011.
This course was aimed at advanced PhD students and post-doctoral researchers who are applying or planning to apply high throughput sequencing technologies and bioinformatics methods in their research.
The aim of this course was to familiarize the participants with advanced data analysis methodologies and provide hands-on training on the latest analytical approaches.Intermediate> 3 hours -
This quick tour provides a brief introduction to Ensembl Genomes, the non-chordate genome browser.
Beginner0.5 hour -
This course focuses on chordate (mostly vertebrate) genomes on the Ensembl website at www.ensembl.org. It provides a quick beginner's guide to the overall structure of the Ensembl genome browser.
Beginner3 hours -
Ensembl runs on the order of 100 browser workshops a year worldwide, and for the first time we make one available online. Here you will find a collection of video lectures from the 'Ensembl Browser workshop' that took place at EMBL-EBI on 31st January 2013, using Ensembl version 70. The exercises associated with the workshop are included to carry out at your leisure.
This workshop provides an introduction to Ensembl, what kind of data Ensembl has, and how to browse and export the data.
We'll also be holding live web-chats to discuss the exercises, or any other Ensembl issues. Have a look at the webchat page to find out when we’ll next be online to take your questions … live!
Beginner> 3 hours -
This course provides a very short introduction to the Ensembl website for browsing chordate genomes. This is a quick overview to the browser, designed to give you an idea of what is possible, and will not give you a full tutorial on how to do specific tasks. Links are provided throughout to other tutorials and videos that may help you.
Beginner0.5 hour -
This quick tour provides a brief introduction to the Enzyme Portal - a data resource that provides access to information from several enzyme-related databases, both at EMBL-EBI and the Swiss Institute of Bioinformatics (SIB).
Beginner0.5 hour -
This quick tour gives a brief introduction to Europe PubMed Central, a free literature resource for biomedical and health researchers.
Beginner0.5 hour -
This course will show you how to search and retrieve nucleotide sequence data from the European Nucleotide Archive (ENA). The ENA provides sequence assembly details and biological annotation, and uses versioning to track sequence changes.
Intermediate3 hours -
This quick tour provides a brief introduction to the Expression Atlas (“Atlas”). To learn more, see the full course on the Atlas.
Beginner0.5 hour
