Hands-on training at EBI - Joint EMBRACE-EBI workshop: understanding protein structures

Title: Joint EMBRACE-EBI workshop: understanding protein structures
Date: 17-20 February 2009
Venue: Hinxton, Cambridge, UK
Organisers: Christine Orengo & James Watson
Admin Support: Alison Barker & Janet Copeland

Program Contents

Downloadable Files
Day 1 - Wed 18 Feb 2009
Lecture: Introduction to the EBI and EMBRACE (James Watson) Lecture: Searching for structures and using molecular graphics viewers (James Watson and Vicky Schneider) Hands on: Molecular Graphics Viewers (James Watson) - Zip folder Lecture: Folds, Families and Structure comparison (Christine Orengo and Oliver Redfern) Lecture: Gene3D (Corin Yeats) Lecture: InterPro (Jennifer McDowall) Hands on: InterPro (Jennifer McDowall) Lecture: PRINTS (Teresa Attwood) Lecture: PRODOM (Daniel Kahn) Hands on: UTOPIA and CINEMA (Teresa Attwood)
Day 2 - Thu 19 Feb 2009
Lecture: Introduction to templates and Tempura (James Watson) Hands on: Motifs (James Watson) - Zip folder Hands on: Catalytic Site Atlas (Nicholas Furnham) Lecture: PDBeMotif (Adel Golovin) Lecture: TreeDet and FireDB (Michael Tress and Gonzalo Lopez) Lecture: MACiE (Gemma Holliday) Hands on: MACiE (Gemma Holliday) Lecture: IntEnz (Paula de Matos) Lecture: Rhea (Paula de Matos) Lecture: ChEBI (Paula de Matos) Hands on: ChEBI exercise 1 (Paula de Matos) Hands on: ChEBI exercise 2 (Paula de Matos) Hands on: ChEBI exercise 3 (Paula de Matos)
Day 3 - Fri 20 Feb 2009
Lecture and hands on: IntAct and PDBe (Samuel Kerrien) Lecture: PDBePisa (Eugene Krissinel) Hands-on: PDBePisa (Eugene Krissinel) Lecture and hands on: Membrane Proteins (Marialuisa Pelligrini-Calace) Lecture: Protein function from structure (James Watson) Hands on: Walkthrough ProFunc and Tempura (James Watson) Lecture and hands-on: Homology modelling (Gert Vriend) Lecture and hands-on: Communicating information with Proteopedia (Jaime Prilusky and Eran Hodis)