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Hands-on training at EBI - Joint EBI-Wellcome Trust Summer School

Course Summary
Course Details Title: Joint EBI-Wellcome Trust Summer School
Date: 14-18 June 2010
Venue: EMBL-EBI, Hinxton, Cambridge, CB10 1SD, UK
Organisers: Vicky Schneider, James Watson
Admin Support: Alison Barker, Holly Foster & Janet Copeland
Registration Opens: 11 January 2010
Registration Deadline: 22 March 2010 - 12 noon (GMT)

This course has been organised with additional support from ENFIN:

enfin


 

The course materials are now available to download. You will need a username and password to access these files. This is only available to people who attended the course (contact courses@ebi.ac.uk for details). Please take note of any materials licensing notices in these documents.

To download a zip folder of each day's course materials click on the relevant link:


Contents of each day's folder

Day 1 - Mon 14 Jun 2010 - Introduction, Historical Background
Summer School Intro (Vicky Schneider)
Matching Resources Exercise (Vicky Schneider)
Historical Background - Europe (Teresa Attwood)
Historical Background - USA (William Pearson)
Day 2 - Tue 15 Jun 2010 - Sequence Searching, Homology, Multiple Alignments
Introduction to homology and similarity searching (William Pearson)
Making Multiple Alignments (Des Higgins)
Protein Function Analysis with Jalview (Geoff Barton, Jim Procter)
Alignment Utopia (Teresa Attwood)
Day 3 - Wed 16 Jun 2010 - Multiple Alignments (cont.), Genomics, Functional Genomics
Phylogenetic-aware alignment + files for exercise (Nick Goldman)
Ensembl, BioMart and Tutorial (Giulietta Spudich)
ArrayExpress and Atlas + tutorial (Gabriella Rustici)
Day 4 - Thu 17 Jun 2010 - Protein resources, Structural Biology
Protein Resources and Tools + tutorial (Jennifer McDowall)
Introduction to the PDBe (Gerard Kleywegt)
PDBe Tools and Services (Gaurav Sahni)
Introduction to homology modelling, from structure to function + exercises (James Watson)
Day 5 - Fri 18 Jun 2010 - Interactions, Pathways and Systems Biology
Introduction to Systems Biology (Nicolas Le Novere)
Interactions - IntAct (Samuel Kerrien)
Pathways - Reactome (Steven Jupe)



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