Hands-on training at EBI - Bioconductor

Course Summary

Title: Microarray and high throughput sequencing data analysis with Bioconductor
Date: 31 January – 5 February 2010
Venue: EMBL-EBI, Hinxton, Cambridge, CB10 1SD, UK
Organisers: Gabriella Rustici & Wolfgang Huber
Admin Support: Janet Copeland
Registration Closes: 11 December 2009 - 12 noon (GMT)
Participation offers by: 18 December 2009 - 12 noon (GMT)

Programme and materials

The materials are only available to course participants and will require a username and password. Please contact the course organisers to gain access.

Time	Topic
Day 1 - Sunday 31 January 2010
	Arrival and Dinner at The Arundel House Hotel, Chesterton Road, Cambridge
Day 2 - Monday 01 February 2010 Download a zip folder of the day's materials here: Monday.zip
09:00 - 10:30	Normalization and pre-processing (Wolfgang Huber)
10:30 - 11:00	Tea break
11:00 - 13:00	Differential expression: moderated t, filtering, multiple testing (Wolfgang Huber)
13:00 - 14:00	Lunch
14:00 - 15:30	Hands-on
15:30 - 16:00	Tea break
16:00 - 17:30	Hands on
Day 3 - Tuesday 2 February 2010 Download a zip folder of the day's materials here: Tuesday.zip
09:00 - 10:30	Differential expression: Linear models (Nuno Barbosa-Morais)
10:30 - 11:00	Tea break
11:00 - 13:00	Probe deisgn + annotation (Nuno Barbosa-Morais)
13:00 - 14:00	Lunch
14:00 - 15:30	Hands On
15:30 - 16:00	Tea break
16:00 - 17:30	Hands On
Day 3 - Wednesday 3 February 2010 Download a zip folder of the day's materials here: Wednesday.zip
09:00 - 10:30	Machine Learning (Bernd Fischer)
10:30 - 11:00	Tea break
11:00 - 12:45	Genome-wide association studies of copy number variants (Richard Pearson)
12:45 - 13:15	Lunch
13:15 - 14:00	R workbench demo (Andrew Tikhonov)
14:00 - 15:30	Practicals
15:30 - 16:00	Tea break
16:00 - 17:30	Practicals
Day 4 - Thursday 4 February 2010 Download a zip folder of the day's materials here: Thursday.zip
09:00 - 10:30	Quality Assessment (Audrey Kauffmann, Gabriella Rustici)
10:30 - 11:00	Tea break
11:00 - 13:00	Image Analysis and Cellular Phenotyping (Gregoire Pau)
13:00 - 14:00	Lunch
14:00 - 15:30	Practicals
15:30 - 16:00	Tea break
16:00 - 17:30	Practicals
Day 5 - Friday 5 February 2010 Download a zip folder of the day's materials here: Friday.zip
09:00 - 10:30	HTS: RNA-seq, ChIP-seq, quality assessment, data management (Simon Anders/Anglea Goncalves/Nicholas Luscombe)
10:30 - 11:00	Tea break
11:00 - 13:00	...contd
13:00 - 14:00	Lunch
14:00 - 15:30	Practicals
15:30 - 16:00	Tea Break
16:00 - close	Practicals, close and survey

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