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Collapse General Hands-on Information
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EBITrainingEBI User Training ProgrammeHands-onSmall Molecule Bioactivity ResourcesProgramme

Hands-on training at EBI - Small Molecule Bioactivity Resources At The EBI

Course Summary
Course Details Title: Small Molecule Bioactivity Resources At The EBI
Date: 25-29 January 2010
Venue: EMBL-EBI, Hinxton, Nr Cambridge, CB10 1SD, UK
Organisers: John Overington, Anne Hersey, Vicky Schneider
Admin Support: Alison Barker & Janet Copeland
Registration Opens: 28 July 2009 - 12 noon (GMT)
Registration Deadline: 11 December 2009 - 12 noon (GMT)
Bursary Application Deadline: 6 November 2009 - 12 noon (GMT)



Programme

Time Topic
Day 1 - Mon 25 January 2010
09:00 - 09:30 Welcome Coffee and Safety Briefing
09:30 - 12:00 Introduction to EMBL-EBI bioactivity resources (John Overington)
12:00 - 13:00 Lunch
13:00 - 15:00 Overview of uses of bioactivity data (John Overington)
15:00 - 15:30 Tea Break
15:30 - 17:30 Review and discussion of student problems (Anna Gaulton/John Overington/Anne Hersey)
Day 2 - Tue 26 January 2010
09:00 - 10:30 Biology led querying (Anna Gaulton/John Overington)
10:30 - 11:00 Coffee break
11:00 - 12:30 Biology led querying (Anna Gaulton/John Overington)
12:30 - 13:30 Lunch
13:30 - 15:00 Problem solving in workgroups - biology use cases
15:00 - 15:30 Tea break
15:30 - 17:30 Problem solving in workgroups - biology use cases
Day 3 - Wed 27 January 2010
09:00 - 10:30 Chemistry led querying (Anne Hersey/Louisa Bellis)
10:30 - 11:00 Coffee break
11:00 - 12:30 Chemistry led querying (Anne Hersey/Louisa Bellis)
12:30 - 13:30 Lunch
13:30 - 15:00 Problem solving in workgroups - chemistry use cases
15:00 - 15:30 Tea break
15:30 - 17:30 Problem solving in workgroups - chemistry use cases
Day 4 - Thu 28 January 2010
09:00 - 10:30 Data integration and complex querying (SQL, etc.) (Bissan Al-Lazikani)
10:30 - 11:00 Coffee break
11:00 - 12:30 Data integration and complex querying (SQL, etc.) (Bissan Al-Lazikani)
12:30 - 13:30 Lunch
13:30 - 15:00 Patent querying (Trainer to be confirmed)
15:00 - 15:30 Tea break
15:30 - 17:30 Prediction of bioactivity from chemical structure (Jeremy Besnard)
Day 5 - Fri 29 January 2010
09:00 - 10:00 Recap of material (John Overington)
10:00 - 10:30 Coffee break
10:30 - 12:30 Advanced applications: Use of protein structures - docking (Noel O'Boyle)
12:30 - 13:30 Lunch
13:30 - 15:00 Advanced applications continued: Use of protein structures - docking (Noel O'Boyle)
15:00 - 15:30 Course Close and Survey


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