spacer
spacer

Hands-on training at EBI - A walkthrough EBI Bioinformatics Resources 

Course Summary
Course DetailsTitle: A walkthrough EBI Bioinformatics Resources 
Date: 11-15 May 2009
Venue: Hinxton, Cambridge, UK
Organisers: Vicky Schneider & James Watson
Admin Support: Alison Barker and Janet Copeland
Registration Deadline: 21st April 2009 - 12 noon (BST)
Download course flyer

aboutregistrationcostfeaturesprogramme

About this Course

Travel and Accommodation Information

The EMBL-EBI maintains the world’s most comprehensive range of molecular databases. This course provides a broad introduction to EBI core resources and practical, trainer-guided demonstration of when, why and how to use them. Several resources will be covered spanning genomics to systems biology. The course will consist of intensive five-day course that combines lectures and hands-on tutorials to help the participants actively learn and resolve biologically relevant problems.

Standard Registration - £400 (single) or £270 (twin)
Industry Programme Member Registration - fee prepaid by Industry Programme

Cost

This course is a fully residential course, without exception. The course has been signficiantly subsidised to keep costs as low as possible. Included in the registration fee are 4 nights accommodation (11, 12, 13 & 14 May) and all meals and refreshments for the duration of the course. Accommodation is on site at The Wellcome Trust Campus. If you require any additional accommodation you must book this yourself - please see the information above.

Single accommodation (limited availability - sold on first come first serve basis) £400
Shared accommodation £270

Features of the EMBL-EBI residential course

EMBL-EBI is located on The Wellcome Trust Genome Campus, Hinxton, near Cambridge. With the Wellcome Trust Sanger Institute as our nearest neighbour we are arguably situated within the world's largest concentration of genomics and bioinformatics expertise.

Hands-on training at the EBI takes place in our state-of-the-art training facilities. Expert trainers lead you through the course programme which is designed to balance instruction with practical exercises. Lunch and coffee breaks are factored into the course programme, allowing you to pose questions to the trainers, to network with the other course delegates or simply to relax and enjoy the surroundings.

For our residential courses, you will stay on-site in the Residential Court, part of the Wellcome Trust Conference Centre on the beautiful 55 acre campus. All rooms are comfortably furnished, with digital televisions, complimentary wireless LAN connections, telephones and en suite facilities.

The three-course evening meals in the restaurant at the Grade II listed Hinxton Hall provide another opportunity to interact with course participants and trainers. Head Chef, Josh Fox, recently won the UK final of the IACC Copper Skillet Challenge 2009. After dinner, course delegates have the option of finishing off the day in the cosy bar, exploring the grounds or strolling the short distance through campus to the local village pub in Hinxton.

A social highlight of our courses is the outing to Cambridge and dinner in one of the historical colleges of the University of Cambridge.



Trainers


trans.gif
Vicky Schneider
Vicky
Schneider

trans.gif
trans.gif
James Watson
James
Watson

trans.gif
trans.gif
Sandra Orchard
Sandra
Orchard

trans.gif
trans.gif
Lennart Martens
Lennart
Martens

trans.gif
trans.gif
Martin Taylor
Martin
Taylor

trans.gif
trans.gif
Michael Schuster
Michael
Schuster

trans.gif

Dietrich Rebholz-Schuhmann
Dietrich
Rebholz-Schuhmann

trans.gif
trans.gif
Gabriella Rustici
Gabriella
Rustici

trans.gif

Paula de Matos
Paula
de Matos

trans.gif
trans.gif
Anton Enright
Anton
Enright

trans.gif

Bijay Jassal
Bijay
Jassal

trans.gif
trans.gif
No Picture
PDBe Trainer
t.b.c.

trans.gif
trans.gif
No Picture
IntAct Trainer
t.b.c.

trans.gif

Jung-jae Kim
Jung-jae
Kim

trans.gif

Course Programme

Time Topic
Mon 11 May 2009   -   Sequence Searching
11:30 - 12:00 Welcoming and Introduction - Vicky Schneider & James Watson
12:00 - 13:00 Lunch
13:00 - 14:00 Literature and Text Mining - Dietrich Rebholz-Schuhmann
14:00 - 15:00 Hands On Text Mining - Jung-jae Kim
15:00 - 15:15 Tea break
15:15 - 16:15 Sequence searching concepts and sequence databases - Martin Taylor
16:15 - 17:30 Hands On: Sequence searching tools - Martin Taylor
Tue 12 May 2009   -   Genomes
09:30 - 10:30 Introduction to Ensembl - Michael Schuster
10:30 - 10:45 Coffee break
10:45 - 12:00 Hands On: Introduction to Ensembl - Michael Schuster
12:00 - 13:00 Lunch
13:00 - 14:00 BioMart - Michael Schuster
14:00 - 15:00 Genebuild - Michael Schuster
15:00 - 15:15 Tea break
15:15 - 16:30 Comparative Genomics in Ensembl - Michael Schuster
16:30 - 17:30 Variation in Ensembl - Michael Schuster
Wed 13 May 2009   -   Protein Sequence Data
09:30 - 10:30 UniProt and InterPro - Sandra Orchard
10:30 - 10:45 Coffee break
10:45 - 12:00 Hands On: UniProt and InterPro - Sandra Orchard
12:00 - 13:00 Lunch
13:00 - 19:00 Free afternoon in Cambridge
19:00 - 22:30 College Dinner at Cambridge University
Thu 14 May 2009   -   Proteomics, Structures and Small Molecules
09:30 - 10:30 Proteomics at the EBI - Lennart Martens
10:30 - 10:45 Coffee break
10:45 - 12:30 Hands On: PRIDE and PICR - Lennart Martens
12:30 - 13:30 Lunch
13:30 - 15:30 Protein Structure resources at the EBI - PDBe team
15:30 - 15:45 Tea break
15:45 - 16:45 Small Molecule resources at the EBI - Paula de Matos
16:45 - 17:30 Hands On: ChEBI - Paula de Matos
Fri 15 May 2009   -   Transcriptomics, RNA, Interactions and Pathways
09:30 - 10:30 Introduction to Transcriptomics - Gabriella Rustici
10:30 - 10:45 Coffee break
10:45 - 12:00 Hands On: Transcriptomics - Gabriella Rustici
12:00 - 13:00 RNA resources at the EBI - Anton Enright
13:00 - 14:00 Lunch
14:00 - 15:30 Lecture / Hands On: Interactions through IntAct - IntAct team
15:30 - 15:45 Tea break
15:45 - 17:15 Lecture / Hands On: Pathways through Reactome - Bijay Jassal
17:15 - 17:30 Course conclusion and survey




spacer
spacer