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Hands-on training at EBI - Programmatic access in Java: webservices & work flows

Course Summary
Course DetailsTitle: Programmatic access in Java: webservices & work flows
Date: 24-27 November 2008
Venue: Hinxton, Cambridge, UK
Course Champions: Phil Jones & Hamish McWilliam
Organisers: Vicky Schneider & James Watson
Admin Support: Alison Barker & Janet Copeland
Registration Deadline: Monday 27 October 2008

About this Course

This course will give you the skills to leverage webservice technology to access and manipulate bioinformatics data resources and tools. You will start with simple scripts accessing individual services and then build upon this to create work flows to solve more complex problems in a reusable manner.

Participants will be exposed to open standards such as Simple Object Access Protocol (SOAP); the Distributed Annotation System (DAS); REST services and the BioMart web service. Several examples of specific web services will be included, covering programmatic access to both databases and tools at the EBI.

Topics include

  • Introduction to the EBI and Webservices
  • Rest and SOAP; application to EBI services (e.g. OLS, PICR, see http://www.ebi.ac.uk/Tools/webservices/)
  • DAS
  • BioMart and Biomart Webservices
  • Workflows: TAVERNA.

Course requirements

Participant must have competence in Java programming. Although no experience in webservices program is expected.

The training is free, however we need to charge participants an administration fee of £25 per day.
Administration fee for this course is £75.

Registration closed.

Trainers


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James Watson
James
Watson

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Hamish McWilliam
Hamish
McWilliam

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Phil Jones
Phil
Jones

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Michael Kleen
Michael
Kleen

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Bruno Aranda
Bruno
Aranda

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Samuel Patient
Sam
Patient

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Janna Hastings
Janna
Hastings

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Syed Haider
Syed
Haider

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Bert Overduin
Bert
Overduin

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Alan Horne
Alan
Horne

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Samuel Kerrien
Samuel
Kerrien

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Sharmila Pillai
Sharmila
Pillai

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Misha Kapushesky
Misha
Kapushesky

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Ibrahim Emam
Ibrahim
Emam

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Program Contents


Time Topic
Day 1 - Mon 24 Nov 2008
12:00 - 13:00 Registration
13:00 - 13:15 Safety and Welcome (James Watson)
13:15 - 13:35 Overview of EBI (James Watson)
13:35 - 14:00 Introduction to webservices at EBI (Hamish McWilliam)
14:00 - 15:00 Technical intro to webservices (External Services)
15:00 - 15:15 Coffee/Tea
15:15 - 17:15 Hands On : Running Webservices (Hamish McWilliam)
17:15 End of day
Day 2 - Tue 25 Nov 2008
09:30 - 11:00 OLS/PICR + hands-on (Phil Jones)
11:00 - 11:15 Coffee/Tea
11:15 - 13:00 UniProt + hands-on (Michael Kleen)
13:00 - 14:00 Lunch
14:00 - 15:00 IntAct + hands-on (Bruno Aranda/Samuel Kerrien)
15:00 - 15:15 Coffee/Tea
15:15 - 16:00 IntAct continued (Bruno Aranda/Samuel Kerrien)
16:00 - 18:00 ChEBI + hands-on (Janna Hastings)
18:00 End of day
Day 3 - Wed 26 Nov 2008
09:30 - 10:00 Introduction to BioMart/Ensembl (Bert Overduin)
10:00 - 10:30 Biomart as a service (Syed Haider)
10:30 - 10:45 Coffee/Tea
10:45 - 11:45 BioMart/Ensembl hands-on session (Phil Jones)
11:45 - 12:45 Integr8 + hands-on (Alan Horne/Andy Yates)
12:45 - 13:45 Lunch
13:45 - 14:45 Literature services + hands-on (Sharmila Pillai)
14:45 - 15:45 ArrayExpress + hands-on (Misha Kapushesky/Ibrahim Emam)
15:45 - 16:00 Coffee/Tea
16:00 - 17:00 ArrayExpress continued (Misha Kapushesky/Ibrahim Emam)
17:00 - 17:15 Questions
17:15 End of day
Day 4 - Thu 27 Nov 2008
09:30 - 10:30 Integration, workflows and open-ended problem session (All trainers)
10:30 - 10:45 Coffee/Tea
10:45 - 13:00 Integration, workflows and open-ended problem session (All trainers)
13:00 End of day









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