EMBL-EBI Bioinformatics Resources Workshop, Pavia 2017

Date:

 Tuesday 21 Wednesday 22 February 2017

Venue: 

Università di Pavia - via Ferrata 1, 27100,  Pavia,  PV, Italy

Application opens: 

Thursday January 19 2017

Application deadline: 

Thursday January 26 2017

Participation: 

By invitation

Contact: 

Johanna Langrish

Registration closed

Course Overview

This workshop has been organised for PhD students within the Department of Biology and Biotechnology, to provide them with and introduction and hands-on experience of EMBL-EBI resources for genome browsing, exploring protein interactions and reaction pathways.

Audience

The sessions are aimed at Bench biologists who have no prior experience in bioinformatics, but need to start exploring these resources for their research.  No knowledge of programming is required, but an undergraduate level knowledge of Biology / molecular biology would be beneficial.

Modules and resources

During this course you will learn about:

  • Interactions and Pathways: IntAct, Complex Portal and Reactome
  • Ensembl

Learning outcomes

After this course you should be able to:

  • Navigate a molecular interaction database, reviewing the alternative data formats and the various tools designed to work with them
  • Explore reactions and pathways using specialised tools
  • List the data types available in Ensembl and how to access them
  • View and explore data in the Ensembl browser

Programme

Time Topic Trainer
Day 1 - 21 February 2017
9:00 Welcome and Introduction Birgit Meldal
9:10 Introduction to IntAct Birgit Meldal
10:30 - 10:45 Tea/Coffee Break  
10:45 -12:30 Introduction to IntAct Birgit Meldal
12:30 - 13:30 Free time (lunch not provided)  
13:30 - 15:00 Introduction to Reactome Birgit Meldal
15:00 - 15:15 Tea/Coffee Break  
15:15 - 17:00 Introduction to Reactome Birgit Meldal
17:00 - 18:00 End of Day 1  
     
Day 2 - 22 February 2017
09:00  Introduction to Ensembl Ben Moore
10:30 - 10:45 Tea/Coffee Break  
10:45 - 12:45 Workshop wrap-up and feedback Ben Moore
13:00 Workshop End