Joint EMBL-EBI/Wellcome Trust Summer School in Bioinformatics
The application system requires cookies, and the limited processing of your personal data in order to function. By applying to this course you are agreeing to this as outlined in our Privacy Notice and Terms of Use
Date:
Monday 23 - Friday 27 June 2014Venue:
European Bioinformatics Institute (EMBL-EBI) - Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, United KingdomApplication deadline:
Tuesday 01 April 2014Participation:
Open application with selectionContact:
Lucy CriddleRegistration fee:
£500Registration closed
Overview
This course will provide an introduction to the use of bioinformatics in biological research using publicly available data resources and tools. Participants will initially be introduced to a range of basic tools and resources applicable across a range of subject areas. To enable more specific exploration of resources in their particular field of interest, participants will then be divided into focused groups to work on a small project set by EMBL-EBI resource and research staff, ending in a presentation from each group on the final day of the course. The course will include training and mentoring provided by experts from EMBL-EBI and external institutes. The programme will be shaped according to participants’ research interests following registration.
Audience
This course is aimed at individuals working in biological disciplines who have little or no experience in bioinformatics. Applicants are expected to be embarking on bioinformatics related projects or need to use such approaches in their work.
Syllabus, tools and resources
During this course you will learn about:
- Bioinformatics basics: file formats, identifiers, ontologies
- Bioinformatics databases: Ensembl, ArrayExpress, Gene Expression Atlas, UniProt, InterPro, IntAct, Reactome, ChEMBL
- Bioinformatics tools: PICR, Blast, FASTA, Clustal Omega, network analysis tools
Please note that the course will not cover aspects of computer programming or in-depth data analysis; there will be no opportunity for you to analyse your own data during this course.
Outcomes
After this course you should be able to:
- Discuss applications of bioinformatics in biological research
- Browse, search, and retrieve biological data from public repositories
- Use appropriate bioinformatics tools to explore biological data
- Comprehend some ways biological data can be stored, organised and interconverted
Programme
Time | Topic | Trainer |
---|---|---|
Day 1 - Monday 23 June 2014 | ||
10:00 | Registration and tea/coffee | |
10:30 | Welcome and intro to the EBI | Laura Emery |
11:00 | Participant introductions | All Participants |
11:30 | The bioinformatics one-way mirror: when "not-true” is not false | Bill Pearson |
12:30 | Lunch | |
13:30 | Genes and genomes: data resources and analytical approaches | Emily Pritchard and Laura Emery |
15:30 | Tea/coffee break | |
16:00 | Study design for Bioinformatics | Alex Bateman |
From 17:50 | Bedroom check-in | |
18:00 | Networking drinks | |
19:00 | Dinner Hinxton Hall | |
Day 2 - Tuesday 24 June 2014 | ||
07:30 | Breakfast | |
08:30 | Review of taught material | Bill Pearson |
09:15 | Introduction to group projects and meet the mentors |
Sarah Morgan |
09:30 | Meet your groups and initial discussions | Participants and Mentors |
10:00 | Tea/coffee break | |
10:30 | Functional genomics and proteins | Sandra Orchard and Gabriella Rustici |
12:00 | Lunch | |
13:00 | Interactions and pathways and chemical biology | Pablo Porras and Louisa Bellis |
14:30 | Tea/coffee break | |
15:00 | An introduction to similarity searching for sequences | Bill Pearson |
16:00 | Tools for bioinformatics | Pablo Porras and Andrew Cowley |
19:00 | Dinner Hinxton Hall | |
20:00 | Cash Bar | |
Day 3 - Wednesday 25 June 2014 | ||
07:30 | Breakfast | |
09:00 | Group work day 1 | |
10:30 | Morning Coffee | |
11:00 | ||
12:00 | Lunch | |
13:30 | ||
15:00 | Afternoon Tea | |
15:30 | ||
17:00 | Keynote lecture | John Marioni |
19:00 | Dinner Hinxton Hall | |
Day 4 - Thursday 26 June 2014 | ||
07:30 | Breakfast | |
09:00 | Group Work Day 2 | |
10:30 | Morning Coffee | |
11:00 | ||
12:30 | Lunch | |
13:30 | ||
15:00 | Afternoon Tea | |
15:30 | ||
17:30 | Keynote | Rachel Harte |
19:00 | Dinner Hinxton Hall | |
Day 5 - Friday 27 June 2014 | ||
07:30 | Breakfast | |
09:00 | Bedroom Checkout – luggage to be stored at the EBI | |
09:30 | Group presentations | All |
10:30 | Morning Coffee | |
11:00 | Group presentations cont. | |
12:00 | Course wrap up and feedback | |
13:00 | Lunch |