OncoTrack Bioinformatics Workshop, Berlin
Venue:
Max Planck Institute for Molecular Genetics,
Berlin, 14195
Germany
See map: Google Maps
Date:
Monday, November 4, 2013 - Wednesday, November 6, 2013
Organizers:
Sarah Morgan
,
EMBL-EBI, UK
Admin support:
Frank O'Donnell
,
EMBL-EBI, UK
Participation:
By invitation 
Provide an overview of EBI resources that can be applied to the analysis of transcriptomic, genomic and proteomic data.
Audience
Members of the OncoTrack project consortium.
Modules and Resources
During this course you will learn about...
- Expression Atlas
- Standards and Ontologies
- Protein Function and Classification
- Interactions and Pathways
- Introduction to Enzymes and the Enzyme Portal
After this course you should be able to...
- Browse and retrieve data from the expression atlas and query for condition-specific gene expression patterns
- Access GO annotations and apply them practically
- Browse the InterPro database
- Explore reactions and pathways through molecular interaction databases
- Navigate and use enzyme resources at EMBL-EBI
| Time | Topic | Trainer |
|---|---|---|
| Day 1 - Monday 4 November - Expression Atlas | ||
| 13:00 - 13:30 | Welcome and Introduction to EMBL-EBI | Sarah Morgan |
| 13:30 - 15:00 | Expression Atlas | Sarah Morgan |
| 15:00 - 15:30 | Tea/coffee break | |
| 15:30 - 17:00 | Expression Atlas (Cont.) | Sarah Morgan |
| Day 2 - Tuesday 5 November | ||
| 09:00 - 10:30 | Standards and Ontologies | Pablo Porras |
| 10:30 - 11:00 | Tea/coffee break | |
| 11:00 - 12:30 | Standards and Ontologies (Cont.) | Pablo Porras |
| 12:30 - 13:30 | Lunch | |
| 13:30 - 15:00 | Interactions and Pathways | Pablo Porras |
| 15:00 - 15:30 | Tea/coffee break | |
| 15:30 - 17:00 | Interactions and Pathways (Cont.) | Pablo Porras |
| Day 3 - Wednesday 6 November | ||
| 09:00 - 10:30 | Protein Function and Classification | Hsin-Yu Chang |
| 10:30 - 11:00 | Tea/coffee break | |
| 11:00 - 12:30 | Protein Function and Classification (Cont.) | Hsin-Yu Chang |
| 12:30 - 13:30 | Lunch | |
| 13:30 - 15:00 | Introduction to Enzymes and the Enzyme portal | Joseph Onwubiko |
| 15:00 - 15:30 | Tea/coffee break | |
| 15:30 - 17:00 | Introduction to Enzymes and the Enzyme portal (Cont.) | Joseph Onwubiko |
There will be a maximum of 20 invited participants on this course; registration is being handled by the host institution.
Tags:
bioinformatics