Interactions & Pathways: towards a whole system perspective
This course explores a variety of Bioinformatics resources and tools dealing with molecular interactions, small molecules, pathways as well as the integration of interaction and pathways data, Networks and Systems modelling.
The course will consist of lectures and hands-on training on the relevant bioinformatics resources and interaction and pathway tools provided by the European Bioinformatics Institute.
Guest Speakers
| Time | Topic |
|---|---|
| Day 1 - Mon 15 June 2009 - Interactions | |
| 13:00 - 13:30 | Registration |
| 13:30 - 13:45 | Welcome & Introduction (Sandra Orchard) |
| 13:45 - 15:00 | Molecular interactions state of the art: an overview + IntAct (Sandra Orchard) |
| 15:00 - 15:30 | Tea break |
| 15:30 - 16:30 | Hands On: IntAct (Sandra Orchard) |
| 16:30 - 17:30 | Making sense of interactions (Rune Linding) |
| 17:30 - 18:15 | Protein interaction networks with functional and structural information: APID (Dr. Javier De Las Rivas) |
| Day 2 - Tue 16 June 2009 - Small Molecules to Proteomics | |
| 09:30 - 11:00 | Ontologies and Standards, OLS (Phil Jones) |
| 11:00 - 11:30 | Coffee break |
| 11:30 - 12:00 | Small molecules and their importance (Janna Hastings) |
| 12:00 - 13:00 | Small molecule databases and exploring tools: ChEBI, Rhea and IntEnz (Janna Hastings) |
| 13:00 - 14:00 | Lunch |
| 14:00 - 15:00 | Proteomics: PRIDE (Lennart Martens) |
| 15:00 - 15:30 | Tea break |
| 15:30 - 17:30 | Hands On: PRIDE (Lennart Martens) |
| Day 3 - Wed 17 June 2009 - Prediction: Pathways & Integration | |
| 09:30 - 10:00 | Pathways informatics: databases & tools (Syed Asad Rahman) |
| 10:00 - 11:00 | Reactome (& BioMart) (David Croft) |
| 11:00 - 11:30 | Coffee break |
| 11:30 - 12:30 | Hands On:Reactome (David Croft) |
| 12:30 - 13:30 | Lunch |
| 13:30 - 15:00 | Cytoscape: integrating interaction and pathways data (Piet Molenaar) |
| 15:00 - 15:30 | Tea break |
| 15:30 - 17:30 | Cytoscape: bringing on your own data (Piet Molenaar) |
| 19:30 | Evening Dinner |
| Day4 - Thu 18 June 2009 - Networks & Systems Modelling | |
| 09:30 - 10:00 | Network Biology (Nicolas Le Novère) |
| 10:00 - 11:00 | BioModels Database (Viji Chelliah and Lukas Endler) |
| 11:00 - 11:30 | Coffee break |
| 11:30 - 12:30 | BioModels Database (Viji Chelliah and Lukas Endler) |
| 12:30 - 13:30 | Lunch |
| 13:30 - 14:30 | Mapping the interactions and functional effects of small molecules (John Overington t.b.c.) |
| 14:30 - 15:00 | Future directions - to close |
The cost of this course is £120, with an option for a £30 course dinner, payment to be made on-line by credit card, debit card or by bank transfer immediately at registration. Places on the course are sold on a first come, first serve basis - places guaranteed on receipt of payment. Industry Programme Members will be charged the same costs, but the fees are deducted directly from industry programme funds.
The course materials are available for download from the following links: