Next generation sequencing is the ultimate tool for all varieties of genetic studies including metagenomics and population studies, epigenetics, transcriptomics, health and disease genetics, genome de novo assembling and re-sequencing. Combining the world's resource of next generation data into one publicly accessible place maximises the potential for finding patterns and comparing like datasets. This is the ultimate dataset for bioinformatics tools and it resides in EBI's Sequence Read Archive (SRA).
During the workshop we will talk about how to represent your own experiments and how to extract the datasets that you need for your analysis interests.
This session will usually be offered as one of a number of short introductions to EBI Services that can be booked separately.
|Day 1 - 5 November 2013|
|13:30 - 14:00||EBI/ ENA / SRA Introduction||Marc Rosello|
|14:00 - 14:30||Talk & "Hands On" exercise: SRA Data model||Marc Rosello|
|14:30 - 14:45||Coffee Break|
|14:45 - 15:00||ENA Browser Demonstration including New Search Tools||Marc Rosello|
|15:00 - 15:30||SRA file formats, Submission Tools, REST, etc||Marc Rosello|
|15:30 - 16:00||"Hands On" exercise: Data Discovery||Marc Rosello|
|16:00 - 16:15||Coffee Break|
|16:15 - 16:30||Demonstration of Data Submission||Marc Rosello|
|16:30 - 17:00||Short Talk on Compression (CRAM) and Wrap up Feedback||Marc Rosello|
To register to attend this event please visit http://training.csx.cam.ac.uk/event/709221