Archives for Next Generation Sequence Data at the EBI - Cambridge University, UK
Next generation sequencing is the ultimate tool for all varieties of genetic studies including metagenomics and population studies, epigenetics, transcriptomics, health and disease genetics, genome de novo assembling and re-sequencing. Combining the world's resource of next generation data into one publicly accessible place maximises the potential for finding patterns and comparing like datasets. This is the ultimate dataset for bioinformatics tools and it resides in EBI's Sequence Read Archive (SRA).
During the workshop we will talk about how to represent your own experiments and how to extract the datasets that you need for your analysis interests.
This session will usually be offered as one of a number of short introductions to EBI Services that can be booked separately.
- Our courses are open to all who might benefit
- Booking priority is given to people from Cambridge University and Collaborating Institutes
- Individual Course fees are required only from External participants not from Collaborating Institutes
- Basic computing skills
- Graduate level in Life Sciences
- To provide a practical introduction to the ENA database of the EBI
|Day 1 - 23 January 2013|
|13:00-13:20||EBI/ ENA / SRA Introduction||Mark Rosello , Arnaud Oisel|
|13:20-14:00||Talk & "Hands On" exercise: SRA Data model||Mark Rosello , Arnaud Oisel|
|14:15-14:45||ENA Browser Demonstration including New Search Tools||Mark Rosello , Arnaud Oisel|
|14:45-15:05||SRA file formats, Submission Tools, REST, etc||Mark Rosello , Arnaud Oisel|
|15:05-15:35||"Hands On" exercise: Data Discovery||Mark Rosello , Arnaud Oisel|
|15:50-16:05||Demonstration of Data Submission||Mark Rosello , Arnaud Oisel|
|16:00-16:30||Short Talk on Compression (CRAM) and Wrap up||Mark Rosello , Arnaud Oisel|
Full details regarding this event can be found here: http://www.training.cam.ac.uk/gsls/event/553030