A database of the known 3D structures of proteins and nucleic acids
Ligand molecules listing ( 348 entries )
This list gives all the complete molecules bound to protein or DNA/RNA in the structures of the PDB.
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1 | 51 | 101 | 151 | 201 | 251 | 301 List of pairs

___Id____

Formula
Description No_of_PDB. entries

H12
 C18H22NO2CL 6- CHLORO- 4- (CYCLOHEXYLOXY)- 3- PROPYLQUINOLIN- 2(1H)- ONE 1

H16
 C18H22NOCLS 6- CHLORO- 4- (CYCLOHEXYLSULFANYL)- 3- PROPYLQUINOLIN- 2(1H)- ONE 1

H18
 C18H22NO2CLS 6- CHLORO- 4- (CYCLOHEXYLSULFINYL)- 3- PROPYLQUINOLIN- 2(1H)- ONE 1

H1D
 C8H16N2O6S (2S)- 2- AMINO- 4- [(2R,3S)- 2,3- DIHYDROXY- 3- N- HYDROXYCARBAMOYL- PROPYLMERCAPTO]BUTYRIC ACID 1

H1L
 C15H11NO4CLF3 (2S)- 2- (4- {[3- CHLORO- 5- (TRIFLUOROMETHYL)PYRIDIN- 2- YL]OXY}PHENOXY)PROPANOIC ACID 1

H1N
 C29H31N4O3S N- [2- OXO- 3- ((E)- PHENYL{[4- (PIPERIDIN- 1- YLMETHYL)PHENYL]IMINO}METHYL)- 2,6- DIHYDRO- 1H- INDOL- 5- YL]ETHANESULFONAMIDE 1

H1S
 C12H15NO19S3 HEPARIN DISACCHARIDE I- S 3

H20
 C18H22NO2CL 6- CHLORO- 4- (CYCLOHEXYLOXY)- 3- ISOPROPYLQUINOLIN- 2(1H)- ONE 1

H2A
 C19H27N4O9S (6R,7R)- 3- [(ACETYLOXY)METHYL]- 7- {[(6S)- 6- (GLYCYLAMINO)- 7- OXIDO- 7- OXOHEPTANOYL]AMINO}- 8- OXO- 5- THIA- 1- AZABICYCLO[4.2.0]OCTANE- 2- CARBOXYLATE 1

H2B
 C9H13N5O3 2- AMINO- 6- (1,2- DIHYDROXY- PROPYL)- 7,8- DIHYDRO- 6H- PTERIDIN- 4- ONE 3

H2P
 C7H15O9P HEPTULOSE- 2- PHOSPHATE 1

H2S
 H2S HYDROSULFURIC ACID 3

H33
 C7H7N4O2CL 8- CHLORO- 1,3- DIMETHYL- 3,7- DIHYDRO- 1H- PURINE- 2,6- DIONE 1

H35
 C10H9N5O N- (FURAN- 2- YLMETHYL)- 7H- PURIN- 6- AMINE 1

H3S
 C12H16NO16S2 HEPARIN DISACCHARIDE III- S 1

H4B
 C9H15N5O3 5,6,7,8- TETRAHYDROBIOPTERIN 24

H4M
 C31H45N6O16P 5,10- DIMETHYLENE TETRAHYDROMETHANOPTERIN 1

H4P
 C7H19NO11P2   1

H4Z
 C31H45N6O17P 5- (4- {[1- (2- AMINO- 5- FORMYL- 7- METHYL- 4- OXO- 3,4,5,6,7,8- HEXAHYDROPTERIDIN- 6- YL)ETHYL]AMINO}PHENYL)- 5- DEOXY- 1- O- {5- O- [(1,3- DICARBOXYPROPOXY)(HYDROXY) PHOSPHORYL]PENTOFURANOSYL}PENTITOL 1

H52
 C16H21N3O2S   4

H53
 C12H16O7 2- (2,5- DIHYDROXYPHENYL)- 6- (HYDROXYMETHYL)OXANE- 3,4,5- TRIOL 2

H5P
 C7H11N2O9P HYDANTOCIDIN- 5'- PHOSPHATE 2

H64
 C18H21N6O2BRS   2

H71
 C18H21N6O2IS 8- [(6- IODO- 1,3- BENZODIOXOL- 5- YL)THIO]- 9- [3- (ISOPROPYLAMINO)PROPYL]- 9H- PURIN- 6- AMINE 1

H7J
 C21H28N4O2 N- [(1S)- 1- {1- [(1R,3E)- 1- ACETYLPENT- 3- EN- 1- YL]- 1H- 1,2,3- TRIAZOL- 4- YL}- 1,2- DIMETHYLPROPYL]BENZAMIDE 2

H8H
 C27H32N5O5CL N- (5- CHLORO- 1,3- BENZODIOXOL- 4- YL)- 7- [2- (4- METHYLPIPERAZIN- 1- YL)ETHOXY]- 5- (TETRAHYDRO- 2H- PYRAN- 4- YLOXY)QUINAZOLIN- 4- AMINE 1

HA1
 C10H14N5O4F2P 9- (5,5- DIFLUORO- 5- PHOSPHONOPENTYL)GUANINE 1

HAA
 C8H8O4 2- (3,4- DIHYDROXYPHENYL)ACETIC ACID 1

HAB
 C13H10N2O3 2- ((4'- HYDROXYPHENYL)- AZO)BENZOIC ACID 1

HAD
 C3H5NO5 (CARBOXYHYDROXYAMINO)ETHANOIC ACID 7

HAE
 C2H5NO2 ACETOHYDROXAMIC ACID 11

HAE-MOP- LEU-PHE- NH2
     2

HAG
 C19H33N3O8S 4- S- GLUTATHIONYL- 5- PENTYL- TETRAHYDRO- FURAN- 2- OL 1

HAI
 C6H14N CYCLOHEXYLAMMONIUM ION 4

HAI(+HAI)
     1

HAL
 C23H29N2O7P N- {[2- ({[1- (4- CARBOXYBUTANOYL)AMINO]- 2- PHENYLETHYL}- HYDROXYPHOSPHINYL)OXY]ACETYL}- 2- PHENYLETHYLAMINE 3

HAM
 C16H21N8O8P HISTIDYL- ADENOSINE MONOPHOSPHATE 2

HAN
 C14H19N3O2 2- AMINO- 5,6- DIMETHYL- BENZIMIDAZOLE- 1- PENTANOIC ACID 2

HAR
 C6H14N4O3 N- OMEGA- HYDROXY- L- ARGININE 10

HAS
 C54H64N4O6FE HEME- AS 2

HAV-3MP- MSB
     2

HAX
 C23H39N8O18P3 N- HYDROXYAMIDOCARBOXYMETHYLDETHIA COENZYME *A 1

HAZ
 C24H33N3O6 4- {4- [2- (1A,7A- DIMETHYL- 4- OXY- OCTAHYDRO- 1- OXA- 4- AZA- CYCLOPROPA[A]NAPHTHALEN- 4- YL) - ACETYLAMINO]- PHENYLCARBAMOYL}- BUTYRIC ACID 1

HB1
 C23H13N3O3RU RUTHENIUM- PYRIDOCARBAZOLE- 1 2

HBA
 C7H6O2 P- HYDROXYBENZALDEHYDE 5

HBB
 C30H43N3O6S N- {(2R)- 2- HYDROXY- 2- [(8S,11S)- 8- ISOPROPYL- 6,9- DIOXO- 2- OXA- 7,10- DIAZABICYCLO[11.2.2]HEPTADECA- 1(15),13,16- TRIEN- 11- YL]ETHYL}- N- ISOPENTYLBENZENESULFONAMIDE 1

HBC
 C20H21NO (2- AMINO- 3- PHENYL- BICYCLO[2.2.1]HEPT- 2- YL)- PHENYL- METHANONE 1

HBD
 C7H7NO2 4- HYDROXYBENZAMIDE 1

HBH
 C29H40N4O7S 2- [(8S,11S)- 11- {(1R)- 1- HYDROXY- 2- [ISOPENTYL(PHENYLSULFONYL)AMINO]ETHYL}- 6,9- DIOXO- 2- OXA- 7,10- DIAZABICYCLO[11.2.2]HEPTADECA- 1(15),13,16- TRIEN- 8- YL]ACETAMIDE 1

HBI
 C9H13N5O3 7,8- DIHYDROBIOPTERIN 16
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