A database of the known 3D structures of proteins and nucleic acids
Ligand molecules listing ( 551 entries )
This list gives all the complete molecules bound to protein or DNA/RNA in the structures of the PDB.
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1 | 51 | 101 | 151 | 201 | 251 | 301 | 351 | 401 | 451 | 501 List of pairs

___Id____

Formula
Description No_of_PDB. entries

C01
 C25H30NO5 (2S)- (4- ISOPROPYLPHENYL)[(2- METHYL- 3- OXO- 5,7- DIPROPYL- 2,3- DIHYDRO- 1,2- BENZISOXAZOL- 6- YL)OXY]ACETATE 1

C02
 C22H21N5O2S   1

C0M
 C27H28N4O2S N- {3- CYANO- 6- [3- (1- PIPERIDINYL)PROPANOYL]- 4,5,6,7- TETRAHYDROTHIENO[2,3- C]PYRIDIN- 2- YL}1- NAPHTHALENECARBOXAMIDE 1

C0R
 C21H30O4 CORTICOSTERONE 2

C10
 C22H46O7 HEXAETHYLENE GLYCOL MONODECYL ETHER 1

C11
 C15H33O2P UNDECYL- PHOSPHINIC ACID BUTYL ESTER 1

C14
 C14H30 TETRADECANE 2

C15
 C17H38NO3S N- DODECYL- N,N- DIMETHYL- 3- AMMONIO- 1- PROPANESULFONATE 5

C15
 C17H38NO3S N- DODECYL- N,N- DIMETHYL- 3- AMMONIO- 1- PROPANESULFONATE 1

C1A
 C14H22N8S2   1

C1B
 C26H24N6O7 (2R)- 2- [5- (5- CARBAMIMIDOYL- 1H- BENZOIMIDAZOL- 2- YL)- 6,2'- DIHYDROXY- 5'- UREIDOMETHYL- BIPHENYL- 3- YL]- SUCCINIC ACID 1

C1D
 C20H23N7OCLF2 1- (2- {[(6- AMINO- 2- METHYLPYRIDIN- 3- YL)METHYL]AMINO}ETHYL)- 6- CHLORO- 3- [(2,2- DIFLUORO- 2- PYRIDIN- 2- YLETHYL)AMINO]- 1,4- DIHYDROPYRAZIN- 2- OL 1

C1F
 C12H16O5 3- CARBOXY- 4- METHYL- 5- PROPYL- 2- FURANPROPIONIC 1

C1M
 C7H7N4CL 1- (4- CHLOROPHENYL)- 2,3- DIHYDRO- 1H- TETRAZOLE 1

C1N
 C30H40N3O6F N- [(BENZYLOXY)CARBONYL]LEUCYL- N~1~- [3- FLUORO- 1- (4- HYDROXYBENZYL)- 2- OXOPROPYL]LEUCINAMIDE 1

C1O
 OCU CU- O LINKAGE 4

C1P
 C28H37N3O5S N~2~- (MORPHOLIN- 4- YLCARBONYL)- N~1~- [(1S,2E)- 1- (2- PHENYLETHYL)- 3- (PHENYLSULFONYL)PROP- 2- ENYL]- D- LEUCINAMIDE 1

C1R
 C9H17NO 4- PIPERIDINEBUTYRATE 2

C20
 C31H51N5O5 ACETYL- NH- VAL- CYCLOHEXYL- CH2[NCH2CHOH]CH2- BENZYL- VAL- NH- ACETYL 2

C21
 C5H4O2S THIOPHENE- 2- CARBOXYLIC ACID 1

C24
 C27H29N7O3 3- ({2- [(4- CARBAMIMIDOYL- PHENYLAMINO)- METHYL]- 3- METHYL- 3H- BENZOIMIDAZOLE- 5- CARBONYL}- PYRIDIN- 2- YL- AMINO)- PROPIONIC ACID ETHYL ESTER 1

C25
 C9H14N3O8P CYTIDINE- 5'- MONOPHOSPHATE 1

C26
 C8H18O4S (2R)- 2- ETHYL- 1- HEXANESULFONIC ACID 1

C28
 C19H26N4O4F4S N- [1- (AMINOMETHYL)CYCLOPROPYL]- 3- (MORPHOLIN- 4- YLSULFONYL)- N~2~- [(1S)- 2,2,2- TRIFLUORO- 1- (4- FLUOROPHENYL)ETHYL]- L- ALANINAMIDE 1

C2A
 C7H8NCL 1- (3- CHLOROPHENYL)METHANAMINE 1

C2C
 CLCU2 CU- CL- CU LINKAGE 2

C2D
 C22H22N5OCL2S 6- CHLORO- 1- (2- {[(5- CHLORO- 1- BENZOTHIEN- 3- YL)METHYL]AMINO}ETHYL)- 3- [(2- PYRIDIN- 2- YLETHYL)AMINO]- 1,4- DIHYDROPYRAZIN- 2- OL 1

C2F
 C20H25N7O6 5- METHYL- 5,6,7,8- TETRAHYDROFOLIC ACID 8

C2G
 C12H21N3O13P2 [CYTIDINE- 5'- PHOSPHATE] GLYCERYLPHOSPHORIC ACID ESTER 1

C2L-G2L- C2L-G2L- A2L-A2L- U2L-U2L- C2L-G2L- C2L-G2L
     1

C2M
 C11H10N4CL2 5- (3,4- DICHLOROPHENYL)- 6- METHYLPYRIMIDINE- 2,4- DIAMINE 1

C2N
 C3H6NO2CL B- CHLORO- D- ALANINE 1

C2O
 OCU2 CU- O- CU LINKAGE 12

C2P
 C9H14N3O8P CYTIDINE- 2'- MONOPHOSPHATE 2

C2R
 C9H14N3O9P 5- AMINO- 1- (5- O- PHOSPHONO- BETA- D- RIBOFURANOSYL)- 1H- IMIDAZOLE- 4- CARBOXYLIC ACID 3

C33
 C30H50O3 2ALPHA- PROPYL- 1ALPHA,25- DIHYDROXYVITAMIN D3 1

C39
 C27H47N3O5 N- [(2S,4S,5S,7R)- 4- AMINO- 8- (BUTYLAMINO)- 5- HYDROXY- 7- METHYL- 2- (1- METHYLETHYL)- 8- OXOOCTYL]- 2- (3- METHOXYPROPOXY)BENZAMIDE 1

C3A
 C31H35N5O5 ALLYL {(1S)- 1- [(5- {4- [(2,3- DIHYDRO- 1H- INDEN- 2- YLAMINO)CARBONYL]BENZYL}- 1,2,4- OXADIAZOL- 3- YL)CARBONYL]- 3- PYRROLIDIN- 3- YLPROPYL}CARBAMATE 2

C3D
 C28H31NO2 (5R,6S)- 6- PHENYL- 5- [4- (2- PYRROLIDIN- 1- YLETHOXY)PHENYL]- 5,6,7,8- TETRAHYDRONAPHTHALEN- 2- OL 1

C3M
 C20H22N2O3S   1

C3O
 C30H50O4 2ALPHA- PROPOXY- 1ALPHA,25- DIHYDROXYVITAMIN D3 1

C3P
 C9H14N3O8P CYTIDINE- 3'- MONOPHOSPHATE 1

C3S
 C27H46O4S CHOLEST- 5- EN- 3- YL HYDROGEN SULFATE 2

C3X
 C8H14O6 2,3- EPOXYPROPYL- BETA- D- XYLOSIDE 1

C41
 C30H53N3O6 ALISKIREN 1

C48
 C22H26N4O4 N1- (1- DIMETHYLCARBAMOYL- 2- PHENYL- ETHYL)- 2- OXO- N4- (2- PYRIDIN- 2- YL- ETHYL)- SUCCINAMIDE 1

C4A
 C28H33N5O5 ETHYL {(1S)- 5- AMINO- 1- [(5- {4- [(2,3- DIHYDRO- 1H- INDEN- 2- YLAMINO)CARBONYL]BENZYL}- 1,2,4- OXADIAZOL- 3- YL)CARBONYL]PENTYL}CARBAMATE 1

C4H
 C19H27N3O3S2 N- [4- ({[5- (DIMETHYLAMINO)- 1- NAPHTHYL]SULFONYL}AMINO)BUTYL]- 3- SULFANYLPROPANAMIDE 1

C4M
 C20H28N2O4S N- [(2R,3S)- 3- AMINO- 2- HYDROXY- 4- PHENYLBUTYL]- 4- METHOXY- 2,3,6- TRIMETHYLBENZENESULFONAMIDE 1

C4P
 C24H29N3O4S N- [(1R)- 2- (BENZYLSULFANYL)- 1- FORMYLETHYL]- N- (MORPHOLIN- 4- YLCARBONYL)- L- PHENYLALANINAMIDE 1
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