spacer
spacer

PDBsum entry 2kz1

Go to PDB code: 
protein Protein-protein interface(s) links
Antiviral protein PDB id
2kz1
Jmol
Contents
Protein chains
165 a.a. *
196 a.a. *
* Residue conservation analysis
PDB id:
2kz1
Name: Antiviral protein
Title: Inter-molecular interactions in a 44 kda interferon-receptor detected by asymmetric back-protonation and 2d noesy
Structure: Interferon alpha-2. Chain: a. Synonym: ifn-alpha-2, interferon alpha-a, leif a. Engineered: yes. Soluble ifn alpha/beta receptor. Chain: b. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ifna2. Expressed in: escherichia coli. Expression_system_taxid: 562. Gene: ifnabr.
NMR struc: 10 models
Authors: I.Nudelman,S.R.Akabayov,E.Schnur,Z.Biron,R.Levy,Y.Xu,D.Yang, J.Anglister
Key ref: I.Nudelman et al. (2010). Intermolecular interactions in a 44 kDa interferon-receptor complex detected by asymmetric reverse-protonation and two-dimensional NOESY. Biochemistry, 49, 5117-5133. PubMed id: 20496919 DOI: 10.1021/bi100041f
Date:
10-Jun-10     Release date:   23-Jun-10    
Supersedes: 2ksx
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P01563  (IFNA2_HUMAN) -  Interferon alpha-2
Seq:
Struc:
188 a.a.
165 a.a.
Protein chain
Pfam   ArchSchema ?
P48551  (INAR2_HUMAN) -  Interferon alpha/beta receptor 2
Seq:
Struc:
515 a.a.
196 a.a.
Key:    PfamA domain  PfamB domain  Secondary structure  CATH domain

 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     extracellular region   2 terms 
  Biological process     negative regulation of T-helper 2 cell cytokine production   19 terms 
  Biochemical function     protein binding     4 terms  

 

 
DOI no: 10.1021/bi100041f Biochemistry 49:5117-5133 (2010)
PubMed id: 20496919  
 
 
Intermolecular interactions in a 44 kDa interferon-receptor complex detected by asymmetric reverse-protonation and two-dimensional NOESY.
I.Nudelman, S.R.Akabayov, E.Schnur, Z.Biron, R.Levy, Y.Xu, D.Yang, J.Anglister.
 
  ABSTRACT  
 
Type I interferons (IFNs) make up a family of homologous helical cytokines initiating strong antiviral and antiproliferative activity. All type I IFNs bind to a common cell surface receptor consisting of two subunits, IFNAR1 and IFNAR2, associating upon binding of interferon. We studied intermolecular interactions between IFNAR2-EC and IFNalpha2 using asymmetric reverse-protonation of the different complex components and two-dimensional homonuclear NOESY. This new approach revealed with an excellent signal-to-noise ratio 24 new intermolecular NOEs between the two molecules despite the low concentration of the complex (0.25 mM) and its high molecular mass (44 kDa). Sequential and side chain assignment of IFNAR2-EC and IFNalpha2 in their binary complex helped assign the intermolecular NOEs to the corresponding protons. A docking model of the IFNAR2-EC-IFNalpha2 complex was calculated on the basis of the intermolecular interactions found in this study as well as four double mutant cycle constraints, previously observed NOEs between a single pair of residues and the NMR mapping of the binding sites on IFNAR2-EC and IFNalpha2. Our docking model doubles the buried surface area of the previous model and significantly increases the number of intermolecular hydrogen bonds, salt bridges, and van der Waals interactions. Furthermore, our model reveals the participation of several new regions in the binding site such as the N-terminus and A helix of IFNalpha2 and the C domain of IFNAR2-EC. As a result of these additions, the orientation of IFNAR2-EC relative to IFNalpha2 has changed by 30 degrees in comparison with a previously calculated model that was based on NMR mapping of the binding sites and double mutant cycle constraints. In addition, the new model strongly supports the recently proposed allosteric changes in IFNalpha2 upon binding of IFNAR1-EC to the binary IFNalpha2-IFNAR2-EC complex.