The Scorecons Server
A program to score residue conservation in a multiple sequence alignment
Instructions
Alignment input
File
format must be
FASTA
or
PIR
format
Output options
Calculate scores for...
all positions
only positions relating to sequence
(top sequence=0)
Scoring options
Scoring method
basicmdm
entropic (21 types)
entropic (7 types)
trident
valdar01
replace raw scores with their fractional rank
General score parameters
substitution matrix
BLOSUM45
BLOSUM62
BLOSUM80
PAM30
PAM70
modified PET91
matrix transformation
linear
karlinlike
gapphilia
Parameters for trident score
diversity
chemistry
gaps
Action