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SAS results for UniProt accession no. P10972

Sequence annotated by structure

Key:
Sec. struc: By homology
  Helix Strand  
Residue contacts:   to DNA/RNA
Active sites:   (from PDB SITE records)
PROSITE patterns: Low   High conservation

Secondary structure shown in red comes from a homologous protein structure which is at least 30% sequence identical to the target protein and has an alignment overlap of at least 80 residues or at least three-quarters of the length of the target sequence (whichever overlap is the larger).

Click on annotated residues to get source(s) of each annotation.

 

FASTA alignment for UniProt accession no. P10972 - coloured by no. of contacts to ligand

Below are the FASTA results from a search of the sequence of UniProt accession no. P10972 against all protein sequences in the PDB. Identical sequences are grouped together and represented by a single 'consensus' sequence (asterisked) onto which all relevant annotations are mapped. The number of sequences represented by each consensus sequence is shown by the '×n' on the right of the alignment. Use the box below to modify the annotations shown on the alignment. At the bottom of the page are given the FASTA stats for all the sequences. There you can exclude any sequences from the alignment.

Struct

FASTA

The search returned 32 unique sequences (including 12 consensus sequences) giving 120 sequence matches in all. The 13 sequences excluded from the alignment are listed at the end.

Modify alignment: Annotate by:
  Number:  
  Show secondary structure: Yes No  


                1         2         3         4         5         6     
       12345678901234567890123456789012345678901234567890123456789012345    Protein name
       ---------+---------+---------+---------+---------+---------+-----    ------------
P10972 ------------mskqpdkqrksqrraplherhkqvratlsadlr--eeyg--qrnvr--vnagd    50S ribosomal protein L24P OS=Haloarcula marismortui  ...
1ffk:Q*-------------skqpdkqrksqrraplherhkqvratlsadlr--eeyg--qrnvr--vnagd×67 Crystal structure of the large ribosomal subunit from  ...
4adx:T -------------skqpdkqrksqrraplherhkqvratlsadlr--eeyg--qrnvr--vnagd    The cryo-em structure of the archaeal 50s ribosomal subunit  ...
1giy:U*-------------skqpdkqrksqrraplherhkqvratlsadlr--eeyg-----vr--vnagd×6  Crystal structure of the ribosome at 5.5 a resolution. This  ...
1vvk:U*---------mkisskqprkqrkflynaplhvrqklmsaplsrelr--ekyk--vrnlp--vrvgd×2  Structure of the methanococcus jannaschii  ...
3zf7:Z ---------vgikcrnrrkarrahfqapshvrrilmsaplskelr--akyn--vrsmp--vrkdd    High-resolution cryo-electron microscopy structure of the  ...
3iz5:Y*------mkrnprvtssrrkcrkahftapssvrrvlmsaalstelr--hkyn--vrsip--irkdd×3  Localization of the large subunit ribosomal proteins into a  ...
4a17:S*-------kthvevssarrkqrkahfaspshlrqtlmsahlskdlr--skyn--vrsmp--vrkdd×4  T.Thermophila 60s ribosomal subunit in complex with  ...
3j3b:Y -------kfnpfvtsdrsknrkrhfnapshirrkimssplskelr--qkyn--vrsmp--irkdd    Structure of the human 60s ribosomal proteins
3j39:Y -------kqnpfvsssrrknrkrhfqapshirrrlmsaplskelr--qkyn--vrsmp--irrdd    Structure of the d. Melanogaster 60s ribosomal proteins
3izc:Y*-----makqsldvssdrrkarkayftapssqrrvllsaplskelr--aqyg--ikalp--irrdd×2  Localization of the large subunit ribosomal proteins into a  ...
3u5e:Y*------akqsldvssdrrkarkayftapssqrrvllsaplskelr--aqyg--ikalp--irrdd×5  The structure of the eukaryotic ribosome at 3.0 a  ...
2ww9:L*-----makqsldvssdrrkarkayftapssqrrvllsaplskelr--aqyg--ikalp--irrdd×3  Cryo-em structure of the active yeast ssh1 complex bound to  ...
3o58:X*------------------karkayftapssqrrvllsaplskelr--aqyg--ikalp--irrdd×2  Yeast 80s ribosome. This entry consists of the 60s subunit  ...
1k5y:U*-------------ssdrrkarkayftapssqrrvllsaplskelr--aqyg--ikalp--irrdd×2  Structure of the translating 80s ribosome from yeast,  ...
3jyw:U -------------ssdrrkarkayftapssqrrvllsaplskelr--aqyg--ikalp--irrdd    Structure of the 60s proteins for eukaryotic ribosome based  ...
2zkr:t -------------tsdrsknrkrhfnapshirrk-imsslskelr--------qknvsmpirkdd    Structure of a mammalian ribosomal 60s subunit within an  ...
3knm:Y -----------------------------------------------------rvkmh--vkkgd    The structures of capreomycin bound to the 70s ribosome.  ...
1o0i:A*-lwkktftlenlnqlcsnsavshlgieisafgedwieatmpvdhrtmqpfgvlhggvs--valae×2  X-ray structure of yb61_haein northeast structural genomics  ...
2b6e:A mlwkktftlenlnqlcsnsavshlgieisafgedwieatmpvdhrtmqpfgvlhggvs--valae    X-ray crystal structure of protein hi1161 from haemophilus  ...
3lz7:A mlwkktftlenlnqlcsnsavshlgieisafgedwieatmpvdhrtmqpfgvlhggvs--valae    Crystal structure of thioesterase hi1161 ec3.1.2.- From  ...

                                         1         1         1         1
           7         8         9         0         1         2         3
       67890123456789012345678901234567890123456789012345678901234567890    Protein name
       ----+---------+---------+---------+---------+---------+---------+    ------------
P10972 tvevlrgdfagee-gevinvdldkavihvedvtlektdgeevprpldtsnvrvt-dldledekre    50S ribosomal protein L24P OS=Haloarcula marismortui  ...
1ffk:Q*tvevlrgdfagee-gevinvdldkavihvedvtlektdgeevprpldtsnvrvt-dldledekre×67 Crystal structure of the large ribosomal subunit from  ...
4adx:T tvevlrgdfagee-gevinvdldkavihvedvtlektdgeevprpldtsnvrvt-dldledekre    The cryo-em structure of the archaeal 50s ribosomal subunit  ...
1giy:U*tvevlrgdfagee-gevinvdldkavihvedvtlektdgeevprpldtsnvrvt-dldledekre×6  Crystal structure of the ribosome at 5.5 a resolution. This  ...
1vvk:U*kvrimrgdykghe-gkvvevdlkryriyvegatlrktngtevfypihpsnvmii-elnledekrk×2  Structure of the methanococcus jannaschii  ...
3zf7:Z evrvkrgkfkgre-grvtacyrlkwvihidkvscekangttvpvgvhtsnveit-klkl-ntrrk    High-resolution cryo-electron microscopy structure of the  ...
3iz5:Y*evqvvrgsykgre-gkvvqvyrrrwvihveritrekvngstvnvgihpskvvvt-klkl-dkdrk×3  Localization of the large subunit ribosomal proteins into a  ...
4a17:S*evlivrgkfkgnk-gkvtqvyrkkwaihvekisknklngapyqiplsasqlvlt-klkl-dksrq×4  T.Thermophila 60s ribosomal subunit in complex with  ...
3j3b:Y evqvvrghykgqqigkvvqvyrkkyviyiervqrekangttvhvgihpskvvit-rlkl-dkdrk    Structure of the human 60s ribosomal proteins
3j39:Y evqvirghfkgnqvgkvvqayrkkfvvyvekiqrenangtnvyvgihpskvliv-klkl-dkdrk    Structure of the d. Melanogaster 60s ribosomal proteins
3izc:Y*evlvvrgskkgqe-gkissvyrlkfavqvdkvtkekvngasvpinlhpsklvit-klhl-dkdrk×2  Localization of the large subunit ribosomal proteins into a  ...
3u5e:Y*evlvvrgskkgqe-gkissvyrlkfavqvdkvtkekvngasvpinlhpsklvit-klhl-dkdrk×5  The structure of the eukaryotic ribosome at 3.0 a  ...
2ww9:L*evlvvrgskkgqe-gkissvyrlkfavqvdkvtkekvngasvpinlhpsklvit-klhl-dkdrk×3  Cryo-em structure of the active yeast ssh1 complex bound to  ...
3o58:X*evlvvrgskkgqe-gkissvyrlkfavqvdkvtkekvngasvpinlhpsklvit-klhl-dkdrk×2  Yeast 80s ribosome. This entry consists of the 60s subunit  ...
1k5y:U*evlvvrgskkgqe-gkissvyrlkfavqvdkvtkekvngasvpinlhpsklvit-klhl-dkdrk×2  Structure of the translating 80s ribosome from yeast,  ...
3jyw:U evlvvrgskkgqe-gkissvyrlkfavqvdkvtkekvngasvpinlhpsklvit-klhl-dkdrk    Structure of the 60s proteins for eukaryotic ribosome based  ...
2zkr:t evqvvrghykgqqigkvvqvyrkkyviyiervqrekangttvhvgihpskvvitrkld-kdrkki    Structure of a mammalian ribosomal 60s subunit within an  ...
3knm:Y tvlvasgkykgrv-gkvkevlpkkyavivegvnivkkavkea--plhaskvrpi-cpacgkptrv    The structures of capreomycin bound to the 70s ribosome.  ...
1o0i:A*tigslagslclee-gktv-vgldinanhlrpvrsgkvtaratpinlgr-niqvw-qidirteenk×2  X-ray structure of yb61_haein northeast structural genomics  ...
2b6e:A tigslagslclee-gktv-vgldinanhlrpvrsgkvtaratpinlgr-niqvw-qidirteenk    X-ray crystal structure of protein hi1161 from haemophilus  ...
3lz7:A tigslagslclee-gktv-vgldinanhlrpvrsgkvtaratpinlgr-niqvw-qidirteenk    Crystal structure of thioesterase hi1161 ec3.1.2.- From  ...

                1         
                4         
       1234567890123456789                                                  Protein name
       ---------+---------                                                  ------------
P10972 arleseddsa---------                                                  50S ribosomal protein L24P OS=Haloarcula marismortui  ...
1ffk:Q*arleseddsa---------                                              ×67 Crystal structure of the large ribosomal subunit from  ...
4adx:T arlesedd-----------                                                  The cryo-em structure of the archaeal 50s ribosomal subunit  ...
1giy:U*arle---------------                                              ×6  Crystal structure of the ribosome at 5.5 a resolution. This  ...
1vvk:U*kiierrag-----------                                              ×2  Structure of the methanococcus jannaschii  ...
3zf7:Z ailerkdrstktd------                                                  High-resolution cryo-electron microscopy structure of the  ...
3iz5:Y*aildrkasgraadka----                                              ×3  Localization of the large subunit ribosomal proteins into a  ...
4a17:S*slltrkaaslkt-------                                              ×4  T.Thermophila 60s ribosomal subunit in complex with  ...
3j3b:Y kilerkaksrqvgkekgk-                                                  Structure of the human 60s ribosomal proteins
3j39:Y ailerrgkgrlaalgk---                                                  Structure of the d. Melanogaster 60s ribosomal proteins
3izc:Y*aliqrkg------------                                              ×2  Localization of the large subunit ribosomal proteins into a  ...
3u5e:Y*aliqrkggkle--------                                              ×5  The structure of the eukaryotic ribosome at 3.0 a  ...
2ww9:L*aliqrkggkle--------                                              ×3  Cryo-em structure of the active yeast ssh1 complex bound to  ...
3o58:X*aliq---------------                                              ×2  Yeast 80s ribosome. This entry consists of the 60s subunit  ...
1k5y:U*aliqrkg------------                                              ×2  Structure of the translating 80s ribosome from yeast,  ...
3jyw:U aliqrkgg-----------                                                  Structure of the 60s proteins for eukaryotic ribosome based  ...
2zkr:t ler----------------                                                  Structure of a mammalian ribosomal 60s subunit within an  ...
3knm:Y rkkflengkkirvcakc--                                                  The structures of capreomycin bound to the 70s ribosome.  ...
1o0i:A*lccvsrltlsvinl-----                                              ×2  X-ray structure of yb61_haein northeast structural genomics  ...
2b6e:A lccvsrltlsvin------                                                  X-ray crystal structure of protein hi1161 from haemophilus  ...
3lz7:A lccvsrltlsvinllehhh                                                  Crystal structure of thioesterase hi1161 ec3.1.2.- From  ...

Residue colours: black = 0, purple = 1, blue = 2, green = 3, orange = 4, red = 5 or more contacts.

Sequence listing

The listing below shows the FASTA statistics for the PDB entries that matched UniProt accession no. P10972. Ditto marks indicate identical sequences represented by a single representative sequence in the alignment above. The representative is asterisked and the names of all its duplicate sequences are indented to the right.

Structures whose names are given in purple are those that are annotated above. The parameters defining which sequences can transfer their annotations are shown at the bottom of the page where they can be altered and the alignment regenerated.

Use the checkboxes to the left of the PDB codes to exclude any sequences from the alignment (or to add back any sequences in the Excluded list). Then click the SELECT button at the bottom of the page to redisplay the alignment.

Aligned sequences

  Smith-
Waterman
score
%-tage
identity
a.a.
overlap
Seq
len
z-score E-
value
  PDB
code
Protein name
1. - - - 120 - - P10972 50S ribosomal protein L24P OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl24p PE=1 SV=3
2. 763 100.0% 119 119 935.3 4e-45 1ffk:Q * Crystal structure of the large ribosomal subunit from haloarcula marismortui at 2.4 angstrom resolution
3. " " " " " "  = 1jj2:S *
Fully refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution
4. " " " " " "  = 1k73:U *
Co-crystal structure of anisomycin bound to the 50s ribosomal subunit
5. " " " " " "  = 1k8a:U *
Co-crystal structure of carbomycin a bound to the 50s ribosomal subunit of haloarcula marismortui
6. " " " " " "  = 1k9m:U *
Co-crystal structure of tylosin bound to the 50s ribosomal subunit of haloarcula marismortui
7. " " " " " "  = 1kc8:U *
Co-crystal structure of blasticidin s bound to the 50s ribosomal subunit
8. " " " " " "  = 1kd1:U *
Co-crystal structure of spiramycin bound to the 50s ribosomal subunit of haloarcula marismortui
9. " " " " " "  = 1kqs:S *
The haloarcula marismortui 50s complexed with a pretranslocational intermediate in protein synthesis
10. " " " " " "  = 1m1k:U *
Co-crystal structure of azithromycin bound to the 50s ribosomal subunit of haloarcula marismortui
11. " " " " " "  = 1m90:U *
Co-crystal structure of cca-phe-caproic acid-biotin and sparsomycin bound to the 50s ribosomal subunit
12. " " " " " "  = 1n8r:U *
Structure of large ribosomal subunit in complex with virginiamycin m
13. " " " " " "  = 1nji:U *
Structure of chloramphenicol bound to the 50s ribosomal subunit
14. " " " " " "  = 1q7y:U *
Crystal structure of ccdap-puromycin bound at the peptidyl transferase center of the 50s ribosomal subunit
15. " " " " " "  = 1q81:U *
Crystal structure of minihelix with 3' puromycin bound to a- site of the 50s ribosomal subunit.
16. " " " " " "  = 1q82:U *
Crystal structure of cc-puromycin bound to the a-site of the 50s ribosomal subunit
17. " " " " " "  = 1q86:U *
Crystal structure of cca-phe-cap-biotin bound simultaneously at half occupancy to both the a-site and p- site of the the 50s ribosomal subunit.
18. " " " " " "  = 1qvf:S *
Structure of a deacylated tRNA minihelix bound to the e site of the large ribosomal subunit of haloarcula marismortui
19. " " " " " "  = 1qvg:S *
Structure of cca oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of haloarcula marismortui
20. " " " " " "  = 1s72:T *
Refined crystal structure of the haloarcula marismortui larg ribosomal subunit at 2.4 angstrom resolution
21. " " " " " "  = 1vq4:T *
The structure of the transition state analogue "daa" bound t large ribosomal subunit of haloarcula marismortui
22. " " " " " "  = 1vq5:T *
The structure of the transition state analogue "raa" bound t large ribosomal subunit of haloarcula marismortui
23. " " " " " "  = 1vq6:T *
The structure of c-hpmn and cca-phe-cap-bio bound to the lar ribosomal subunit of haloarcula marismortui
24. " " " " " "  = 1vq7:T *
The structure of the transition state analogue "dca" bound t large ribosomal subunit of haloarcula marismortui
25. " " " " " "  = 1vq8:T *
The structure of ccda-phe-cap-bio and the antibiotic sparsom to the large ribosomal subunit of haloarcula marismortui
26. " " " " " "  = 1vq9:T *
The structure of cca-phe-cap-bio and the antibiotic sparsomy to the large ribosomal subunit of haloarcula marismortui
27. " " " " " "  = 1vqk:T *
The structure of ccda-phe-cap-bio bound to the a site of the subunit of haloarcula marismortui
28. " " " " " "  = 1vql:T *
The structure of the transition state analogue "dcsn" bound large ribosomal subunit of haloarcula marismortui
29. " " " " " "  = 1vqm:T *
The structure of the transition state analogue "dan" bound t large ribosomal subunit of haloarcula marismortui
30. " " " " " "  = 1vqn:T *
The structure of cc-hpmn and cca-phe-cap-bio bound to the la ribosomal subunit of haloarcula marismortui
31. " " " " " "  = 1vqo:T *
The structure of ccpmn bound to the large ribosomal subunit marismortui
32. " " " " " "  = 1vqp:T *
The structure of the transition state analogue "rap" bound t large ribosomal subunit of haloarcula marismortui
33. " " " " " "  = 1w2b:S *
Trigger factor ribosome binding domain in complex with 50s
34. " " " " " "  = 1yhq:T *
Crystal structure of azithromycin bound to the g2099a mutant ribosomal subunit of haloarcula marismortui
35. " " " " " "  = 1yi2:T *
Crystal structure of erythromycin bound to the g2099a mutant ribosomal subunit of haloarcula marismortui
36. " " " " " "  = 1yij:T *
Crystal structure of telithromycin bound to the g2099a mutan ribosomal subunit of haloarcula marismortui
37. " " " " " "  = 1yit:T *
Crystal structure of virginiamycin m and s bound to the 50s subunit of haloarcula marismortui
38. " " " " " "  = 1yj9:T *
Crystal structure of the mutant 50s ribosomal subunit of hal marismortui containing a three residue deletion in l22
39. " " " " " "  = 1yjn:T *
Crystal structure of clindamycin bound to the g2099a mutant ribosomal subunit of haloarcula marismortui
40. " " " " " "  = 1yjw:T *
Crystal structure of quinupristin bound to the g2099a mutant ribosomal subunit of haloarcula marismortui
41. " " " " " "  = 2otj:T *
13-deoxytedanolide bound to the large subunit of haloarcula marismortui
42. " " " " " "  = 2otl:T *
Girodazole bound to the large subunit of haloarcula marismor
43. " " " " " "  = 2qa4:T *
A more complete structure of the the l7/l12 stalk of the haloarcula marismortui 50s large ribosomal subunit
44. " " " " " "  = 2qex:T *
Negamycin binds to the wall of the nascent chain exit tunnel 50s ribosomal subunit
45. " " " " " "  = 3cc2:T *
The refined crystal structure of the haloarcula marismortui ribosomal subunit at 2.4 angstrom resolution with rrna sequ the 23s rrna and genome-derived sequences for r-proteins
46. " " " " " "  = 3cc4:T *
Co-crystal structure of anisomycin bound to the 50s ribosoma
47. " " " " " "  = 3cc7:T *
Structure of anisomycin resistant 50s ribosomal subunit: 23s mutation c2487u
48. " " " " " "  = 3cce:T *
Structure of anisomycin resistant 50s ribosomal subunit: 23s mutation u2535a
49. " " " " " "  = 3ccj:T *
Structure of anisomycin resistant 50s ribosomal subunit: 23s mutation c2534u
50. " " " " " "  = 3ccl:T *
Structure of anisomycin resistant 50s ribosomal subunit: 23s mutation u2535c. Density for anisomycin is visible but not in model.
51. " " " " " "  = 3ccm:T *
Structure of anisomycin resistant 50s ribosomal subunit: 23s mutation g2611u
52. " " " " " "  = 3ccq:T *
Structure of anisomycin resistant 50s ribosomal subunit: 23s mutation a2488u
53. " " " " " "  = 3ccr:T *
Structure of anisomycin resistant 50s ribosomal subunit: 23s mutation a2488c. Density for anisomycin is visible but not in the model.
54. " " " " " "  = 3ccs:T *
Structure of anisomycin resistant 50s ribosomal subunit: 23s mutation g2482a
55. " " " " " "  = 3ccu:T *
Structure of anisomycin resistant 50s ribosomal subunit: 23s mutation g2482c
56. " " " " " "  = 3ccv:T *
Structure of anisomycin resistant 50s ribosomal subunit: 23s mutation g2616a
57. " " " " " "  = 3cd6:T *
Co-cystal of large ribosomal subunit mutant g2616a with cc-p
58. " " " " " "  = 3cma:T *
The structure of cca and cca-phe-cap-bio bound to the large subunit of haloarcula marismortui
59. " " " " " "  = 3cme:T *
The structure of ca and cca-phe-cap-bio bound to the large r subunit of haloarcula marismortui
60. " " " " " "  = 3cpw:S *
The structure of the antibiotic linezolid bound to the large ribosomal subunit of haloarcula marismortui
61. " " " " " "  = 3cxc:S *
The structure of an enhanced oxazolidinone inhibitor bound to the 50s ribosomal subunit of h. Marismortui
62. " " " " " "  = 3g4s:T *
Co-crystal structure of tiamulin bound to the large ribosoma
63. " " " " " "  = 3g6e:T *
Co-crystal structure of homoharringtonine bound to the large subunit
64. " " " " " "  = 3g71:T *
Co-crystal structure of bruceantin bound to the large riboso subunit
65. " " " " " "  = 3i55:T *
Co-crystal structure of mycalamide a bound to the large ribosomal subunit
66. " " " " " "  = 3i56:T *
Co-crystal structure of triacetyloleandomcyin bound to the large ribosomal subunit
67. " " " " " "  = 3ow2:S *
Crystal structure of enhanced macrolide bound to 50s ribosom
68. " " " " " "  = 4hub:T *
The re-refined crystal structure of the haloarcula marismort ribosomal subunit at 2.4 angstrom resolution: more complete of the l7/l12 and l1 stalk, l5 and lx proteins
69. 753 100.0% 117 117 923.3 1.9e-44 4adx:T The cryo-em structure of the archaeal 50s ribosomal subunit complex with initiation factor 6
70. 689 97.3% 113 110 846.3 3.7e-40 1giy:U * Crystal structure of the ribosome at 5.5 a resolution. This file, 1giy, contains the 50s ribosome subunit. The 30s ribosome subunit, three tRNA, and mRNA molecules are in the file 1gix
71. " " " " " "  = 1ml5:u *
Structure of the e. Coli ribosomal termination complex with factor 2
72. " " " " " "  = 1yl3:U *
Crystal structure of 70s ribosome with thrs operator and trn subunit. The coordinates for the small subunit are in the p 1yl4.
73. " " " " " "  = 2b66:Y *
50s ribosomal subunit from a crystal structure of release fa trnas and mRNA bound to the ribosome. This file contains th subunit from a crystal structure of release factor rf1, trn mRNA bound to the ribosome and is described in remark 400
74. " " " " " "  = 2b9n:Y *
50s ribosomal subunit from a crystal structure of release fa trnas and mRNA bound to the ribosome. This file contains th subunit from a crystal structure of release factor rf1, trn mRNA bound to the ribosome and is described in remark 400.
75. " " " " " "  = 2b9p:Y *
50s ribosomal subunit from a crystal structure of the riboso complex with trnas and mRNA with a stop codon in the a-site file contains the 50s subunit from a crystal structure of t ribosome in complex with trnas and mRNA with a stop codon i site and is described in remark 400.
76. 368 52.2% 113 121 457.8 1.6e-18 1vvk:U * Structure of the methanococcus jannaschii ribosome-secyebeta complex (secyebeta + 50s ribosomal proteins)
77. " " " " " "  = 3j21:U *
Promiscuous behavior of proteins in archaeal ribosomes revea cryo-em: implications for evolution of eukaryotic ribosomes ribosomal proteins)
78. 250 41.6% 113 125 314.9 1.4e-10 3zf7:Z High-resolution cryo-electron microscopy structure of the tr brucei ribosome
79. 226 39.8% 108 130 285.7 6.1e-09 3iz5:Y * Localization of the large subunit ribosomal proteins into a cryo-em map of triticum aestivum translating 80s ribosome
80. " " " " " "  = 3izr:Y *
Localization of the large subunit ribosomal proteins into a cryo-em map of triticum aestivum translating 80s ribosome
81. " " " " " "  = 3j61:Y *
Localization of the large subunit ribosomal proteins into a cryo-em map of triticum aestivum translating 80s ribosome
82. 222 38.3% 107 126 281.1 1.1e-08 4a17:S * T.Thermophila 60s ribosomal subunit in complex with initiation factor 6. This file contains 5s rrna, 5.8s rrna and proteins of molecule 2.
83. " " " " " "  = 4a1a:S *
T.Thermophila 60s ribosomal subunit in complex with initiation factor 6. This file contains 5s rrna, 5.8s rrna and proteins of molecule 3.
84. " " " " " "  = 4a1c:S *
T.Thermophila 60s ribosomal subunit in complex with initiation factor 6. This file contains 5s rrna, 5.8s rrna and proteins of molecule 4.
85. " " " " " "  = 4a1e:S *
T.Thermophila 60s ribosomal subunit in complex with initiation factor 6. This file contains 5s rrna, 5.8s rrna and proteins of molecule 1
86. 212 36.8% 114 133 268.7 5.5e-08 3j3b:Y Structure of the human 60s ribosomal proteins
87. 207 34.8% 115 131 262.7 1.2e-07 3j39:Y Structure of the d. Melanogaster 60s ribosomal proteins
88. 201 35.1% 114 123 255.8 2.8e-07 3izc:Y * Localization of the large subunit ribosomal proteins into a cryo-em map of saccharomyces cerevisiae translating 80s rib
89. " " " " " "  = 3izs:Y *
Localization of the large subunit ribosomal proteins into a cryo-em map of saccharomyces cerevisiae translating 80s rib
90. 201 35.1% 114 126 255.7 2.9e-07 3u5e:Y * The structure of the eukaryotic ribosome at 3.0 a resolution entry contains proteins of the 60s subunit, ribosome a
91. " " " " " "  = 3u5i:Y *
The structure of the eukaryotic ribosome at 3.0 a resolution entry contains proteins of the 60s subunit, ribosome b
92. " " " " " "  = 4b6a:Y *
Cryo-em structure of the 60s ribosomal subunit in complex with arx1 and rei1
93. " " " " " "  = 4byn:Y *
Cryo-em reconstruction of the 80s-eif5b-met-itrnamet eukaryo translation initiation complex
94. " " " " " "  = 4byu:Y *
Cryo-em reconstruction of the 80s-eif5b-met-itrnamet eukaryotic translation initiation complex
95. 201 35.1% 114 127 255.6 2.9e-07 2ww9:L * Cryo-em structure of the active yeast ssh1 complex bound to yeast 80s ribosome
96. " " " " " "  = 2wwa:L *
Cryo-em structure of idle yeast ssh1 complex bound to the yeast 80s ribosome
97. " " " " " "  = 2wwb:L *
Cryo-em structure of the mammalian sec61 complex bound to th actively translating wheat germ 80s ribosome
98. 200 36.1% 108 107 255.4 3e-07 3o58:X * Yeast 80s ribosome. This entry consists of the 60s subunit o first 80s in the asymmetric unit.
99. " " " " " "  = 3o5h:X *
Yeast 80s ribosome. This entry consists of the 60s subunit o second 80s in the asymmetric unit.
100. 200 36.1% 108 115 255.0 3.2e-07 1k5y:U * Structure of the translating 80s ribosome from yeast, obtained by docking atomic models for RNA and protein components into a 15a cryo-em map. This file 1k5y contains the 60s ribosomal subunit. The file 1k5x contains the 40s ribosomal subunit, the p-site bound tRNA and the mRNA codon.
101. " " " " " "  = 1s1i:U *
Structure of the ribosomal 80s-eef2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 a cryo-em map. This file, 1s1i, contains 60s subunit. The 40s ribosomal subunit is in file 1s1h.
102. 200 36.1% 108 116 254.9 3.2e-07 3jyw:U Structure of the 60s proteins for eukaryotic ribosome based map of thermomyces lanuginosus ribosome at 8.9a resolution
103. 170 37.4% 107 110 219.0 3.2e-05 2zkr:t Structure of a mammalian ribosomal 60s subunit within an 80s obtained by docking homology models of the RNA and proteins 8.7 a cryo-em map
104. 93 37.9% 58 88 127.2 4.2 3knm:Y The structures of capreomycin bound to the 70s ribosome. Thi contains the 50s subunit for molecule i.
105. 92 28.1% 89 137 123.5 6.7 1o0i:A * X-ray structure of yb61_haein northeast structural genomics consortium target ir63.
106. " " " " " "  = 1sc0:A *
X-ray structure of yb61_haein northeast structural genomics consortium target ir63
107. 92 28.1% 89 137 123.5 6.7 2b6e:A X-ray crystal structure of protein hi1161 from haemophilus influenzae. Northeast structural genomics consortium target ir63.
108. 92 28.1% 89 143 123.2 6.9 3lz7:A Crystal structure of thioesterase hi1161 ec3.1.2.- From haemophilus influenzae. Orthorombic crystal form. Northeast structural genomics consortium target ir63

Number of sequences: 108

Excluded sequences

  Smith-
Waterman
score
%-tage
identity
a.a.
overlap
Seq
len
z-score E-
value
  PDB
code
Protein name
1. 92 28.1% 89 146 123.1 7 2b6e:D X-ray crystal structure of protein hi1161 from haemophilus influenzae. Northeast structural genomics consortium target ir63.
2. 90 37.7% 53 103 122.6 7.4 1twv:M Model structure of the t. Thermophilus 70s ribosome,50s subunit of 70s ribosome. This file, 1twv, contains only molecules of the 50s ribosomal subunit. The 30s subunit is in the PDB file 1twt.
3. 84 36.5% 52 58 118.6 12 1nz9:A Solution structure of the n-utilisation substance g (nusg) c-terminal (ngc) domain from thermus thermophilus
4. 92 24.8% 101 605 115.1 20 4umv:A Crystal structure of a zinc-transporting pib-type atpase in the e2p state
5. 81 34.0% 47 69 114.0 22 2do3:A Solution structure of the third kow motif of transcription elongation factor spt5
6. 91 24.2% 99 603 113.9 23 4umw:A Crystal structure of a zinc-transporting pib-type atpase in e2.Pi state
7. 82 57.1% 21 96 113.4 24 2ftc:N * Structural model for the large subunit of the mammalian mito ribosome
8. " " " " " "  = 3iy9:N *
Leishmania tarentolae mitochondrial large ribosomal subunit model
9. 82 28.6% 56 110 112.6 27 3bbo:W Homology model for the spinach chloroplast 50s subunit fitte cryo-em map of the 70s chlororibosome
10. 83 38.7% 31 147 112.2 28 3p8b:B X-ray crystal structure of pyrococcus furiosus transcription elongation factor spt4/5
11. 77 34.1% 44 59 110.1 37 2e6z:A Solution structure of the second kow motif of human transcription elongation factor spt5
12. 82 33.3% 66 103 109.4 41 4ce4:Y 39s large subunit of the porcine mitochondrial ribosome
13. 83 32.2% 59 268 108.8 44 3nuq:A Structure of a putative nucleotide phosphatase from saccharo cerevisiae

Number of sequences: 13

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Annotation parameters

The parameters below were used in determining which structural annotations could be transferred on to the target sequence. You can change the parameters and regenerate the SAS alignments and annotation by pressing the Rerun button.

Min. seq. identity:   Min. seq. overlap   Max. E-value

  spacer

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