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SAS results for UniProt accession no. P10175

Sequence annotated by structure

Key:
Sec. struc: By homology
  Helix Strand  
Residue contacts:   to ligand
Active sites:   (from PDB SITE records)

Secondary structure shown in red comes from a homologous protein structure which is at least 30% sequence identical to the target protein and has an alignment overlap of at least 80 residues or at least three-quarters of the length of the target sequence (whichever overlap is the larger).

Click on annotated residues to get source(s) of each annotation.

 

FASTA alignment for UniProt accession no. P10175 - coloured by no. of contacts to ligand

Below are the FASTA results from a search of the sequence of UniProt accession no. P10175 against all protein sequences in the PDB. Identical sequences are grouped together and represented by a single 'consensus' sequence (asterisked) onto which all relevant annotations are mapped. The number of sequences represented by each consensus sequence is shown by the '×n' on the right of the alignment. Use the box below to modify the annotations shown on the alignment. At the bottom of the page are given the FASTA stats for all the sequences. There you can exclude any sequences from the alignment.

Struct

FASTA

The search returned 17 unique sequences (including 1 consensus sequences) giving 42 sequence matches in all.

Modify alignment: Annotate by:
  Number:  
  Show secondary structure: Yes No  


                1         2         3         4         5         6     
       12345678901234567890123456789012345678901234567890123456789012345    Protein name
       ---------+---------+---------+---------+---------+---------+-----    ------------
P10175 -----------------------------------------------------------------    Cytochrome c oxidase subunit 8B, mitochondrial OS=Bos  ...
1occ:M*-----------------------------------------------------------------×26 Structure of bovine heart cytochromE C oxidase at the fully  ...
3sjp:A -------------------------------------------esrtkpftvpiltveemtnsrf    Structural characterization of a gii.4 2004 norovirus varian
2vge:A -----------------------------------------------------------------    Crystal structure of thE C-terminal region of human iaspp
3skb:I -------------------------------------------------rtkpftvpiltveemt    Structural characterization of a gii.4 2004 norovirus varian
1zjj:A -----------------------------------------------------------------    Crystal structure of hypothetical protein ph1952 from  ...
3sej:I --------------------------------------------------------esrtkpftv    Structural characterization of a gii.4 2004 norovirus  ...
3sld:H ------------------------------------------------esrtkpftvpiltveem    Structural characterization of a gii.4 2004 norovirus  ...
3sln:H -------------------------------------------------esrtkpftvpiltvee    Structural characterization of a gii.4 2004 norovirus  ...
3l81:A ----------------------nevfldvverlsvliasngsllkvdvqgeirlksflpsgsemr    Crystal structure of adaptor protein complex 4 (ap-4) mu4  ...
4n2r:A -----------------------------------------------------------------    Crystal structure of the alpha-l-arabinofuranosidase  ...
4n1i:A -----------------------------------------------------------------    Crystal structure of the alpha-l-arabinofuranosidase  ...
2c3a:B lpvldqltdppgvrrcyhiqaglpdpfqppslpitvyyavleracrsvllnapseapqivrgase    Structure of unliganded hsv gd reveals a mechanism for  ...
1hk6:A -----------------------------------------------------------------    Ral binding domain from sec5
2bl0:A -----------------------------------------------------------------    Physarum polycephalum myosin ii regulatory domain
3cyj:A -----------------------------------------------------------------    Crystal structure of a mandelate racemase/muconate  ...
3cbg:A -----------------------------------------------------------------    Functional and structural characterization of a  ...
3rcn:A -----------------------------------------------------------------    Crystal structure of beta-n-acetylhexosaminidase from  ...

                                         1         1         1         1
           7         8         9         0         1         2         3
       67890123456789012345678901234567890123456789012345678901234567890    Protein name
       ----+---------+---------+---------+---------+---------+---------+    ------------
P10175 -----------------------------------------------------------------    Cytochrome c oxidase subunit 8B, mitochondrial OS=Bos  ...
1occ:M*-----------------------------------------------------------------×26 Structure of bovine heart cytochromE C oxidase at the fully  ...
3sjp:A pipleklftgpssafvvqpqngrcttdgallgttqlspvdictfrgdvthiagtqnytmnlasqn    Structural characterization of a gii.4 2004 norovirus varian
2vge:A -----------------------------------------------------------------    Crystal structure of thE C-terminal region of human iaspp
3skb:I nsrfpipleklftgpssafvvqpqngrcttdgallgttqlspvdictfrgdvthiagtqnytmnl    Structural characterization of a gii.4 2004 norovirus varian
1zjj:A -----------------------------------------------------------------    Crystal structure of hypothetical protein ph1952 from  ...
3sej:I piltveemtnsrfpipleklftgpssafvvqpqngrcttdgallgttqlspvdictfrgdvthia    Structural characterization of a gii.4 2004 norovirus  ...
3sld:H tnsrfpipleklftgpssafvvqpqngrcttdgallgttqlspvdictfrgdvthiagtqnytmn    Structural characterization of a gii.4 2004 norovirus  ...
3sln:H mtnsrfpipleklftgpssafvvqpqngrcttdgallgttqlspvdictfrgdvthiagtqnytm    Structural characterization of a gii.4 2004 norovirus  ...
3l81:A iglteefsvgkselrgygpgirvdevsfhssvnldefeshrilrlqppqgeltvmryqlsddlps    Crystal structure of adaptor protein complex 4 (ap-4) mu4  ...
4n2r:A -------------------------------------------scalpttyrwtssaplaqpkdg    Crystal structure of the alpha-l-arabinofuranosidase  ...
4n1i:A -------------------------------------------scalpttyrwtssaplaqpkdg    Crystal structure of the alpha-l-arabinofuranosidase  ...
2c3a:B dvrkqpynltiawfrmggncaipitvmeytecsynkslgacpirtqprwnyydsfsavsednlgf    Structure of unliganded hsv gd reveals a mechanism for  ...
1hk6:A -----------------------------------------------------------------    Ral binding domain from sec5
2bl0:A -----------------------------------------------------------------    Physarum polycephalum myosin ii regulatory domain
3cyj:A -----prverlevsaytvptdypesdgtlqwdsttmilveahgggrkglgytygdvsvgrfvesk    Crystal structure of a mandelate racemase/muconate  ...
3cbg:A -------------------------kgitgfdpslysylqsisaddsfylaqlrretahlpgapm    Functional and structural characterization of a  ...
3rcn:A ------------------------------------msafhqlipapwsfsagtgeleldagtsv    Crystal structure of beta-n-acetylhexosaminidase from  ...

                1         1         1         1         1         1     
                4         5         6         7         8         9     
       12345678901234567890123456789012345678901234567890123456789012345    Protein name
       ---------+---------+---------+---------+---------+---------+-----    ------------
P10175 -----------------------------------------------------------------    Cytochrome c oxidase subunit 8B, mitochondrial OS=Bos  ...
1occ:M*-----------------------------------------------------------------×26 Structure of bovine heart cytochromE C oxidase at the fully  ...
3sjp:A wnnydpteeipaplgtpdfvgkiqgvltqttrrdgstrghkatvstgsvhftpklgsvqfstdts    Structural characterization of a gii.4 2004 norovirus varian
2vge:A -----------------------------------------------------------------    Crystal structure of thE C-terminal region of human iaspp
3skb:I asqnwnnydpteeipaplgtpdfvgkiqgvltqttrrdgstrghkatvstgsvhftpklgsvqfs    Structural characterization of a gii.4 2004 norovirus varian
1zjj:A ----------------------------------------------------------mvaiifd    Crystal structure of hypothetical protein ph1952 from  ...
3sej:I gtqnytmnlsqnwnnydpteeipaplgtpdfvgkiqgvltqttrrdgstrghkatvstgsvhftp    Structural characterization of a gii.4 2004 norovirus  ...
3sld:H lasqnwnnydpteeipaplgtpdfvgkiqgvltqttrrdgstrghkatvstgsvhftpklgsvqf    Structural characterization of a gii.4 2004 norovirus  ...
3sln:H nlasqnwnnydpteeipaplgtpdfvgkiqgvltqttrrdgstrghkatvstgsvhftpklgsvq    Structural characterization of a gii.4 2004 norovirus  ...
3l81:A plpfrlfpsvqwdrgsgrlqvylklrcdllsksqalnvrlhlplprgvvslsqelsspeqkaela    Crystal structure of adaptor protein complex 4 (ap-4) mu4  ...
4n2r:A wvslkdfthvpyngqhlvyasyhdstkygsmafspfkhwadmatatqtgmtqaavaptvfyftpk    Crystal structure of the alpha-l-arabinofuranosidase  ...
4n1i:A wvslkdfthvpyngqhlvyasyhdstkygsmafspfkhwadmatatqtgmtqaavaptvfyftpk    Crystal structure of the alpha-l-arabinofuranosidase  ...
2c3a:B lmhapafetagtylrlvkindwteitqfilehrakgsckyalplrippsaclspqayqqgvtvds    Structure of unliganded hsv gd reveals a mechanism for  ...
1hk6:A -----------------------------------------------------------------    Ral binding domain from sec5
2bl0:A -----------------------------------------------------------------    Physarum polycephalum myosin ii regulatory domain
3cyj:A lagvaegsdalsppavwarmqaairnagrpgvgamavsavdialwdlkarllglpladalprfha    Crystal structure of a mandelate racemase/muconate  ...
3cbg:A qispeqaqflgllisltgakqvleigvfrgysalamalqlppdgqiiacdqdpnataiakkywqk    Functional and structural characterization of a  ...
3rcn:A gadpelrgprrwltralggatgwdlapapareagirllldpsldaeayrlevsdavvisaggaag    Crystal structure of beta-n-acetylhexosaminidase from  ...

           2         2         2         2         2         2         2
           0         1         2         3         4         5         6
       67890123456789012345678901234567890123456789012345678901234567890    Protein name
       ----+---------+---------+---------+---------+---------+---------+    ------------
P10175 -------mlrlap-tvrllqapl---r--gwa---vp--k-----ah-itak--paktptspk--    Cytochrome c oxidase subunit 8B, mitochondrial OS=Bos  ...
1occ:M*------------------------------------------------ITAK--PAKTPTSPK--×26 Structure of bovine heart cytochromE C oxidase at the fully  ...
3sjp:A ndfetgqntrftp--vgvvq-pq---q---wv---lp--dysgrdshnvhla--pavaptfpg--    Structural characterization of a gii.4 2004 norovirus varian
2vge:A -sprkarrarlnp-lvllldaal---t--g-e---le--v-----vq-qavk--emndpsqpn--    Crystal structure of thE C-terminal region of human iaspp
3skb:I tdtsndfetgqnt-rftpvgvvp---q--qwv---lp--dysgrdshnvhla--pavaptfpg--    Structural characterization of a gii.4 2004 norovirus varian
1zjj:A mdgvlyrgnraip-gvreliefl---k--erg---ip--f-----af-ltnn--stktpemyr--    Crystal structure of hypothetical protein ph1952 from  ...
3sej:I klgsvqfstfetg-qntrftpvg---v--qwv---lp--dysgrdshnvhla--pavaptfpg--    Structural characterization of a gii.4 2004 norovirus  ...
3sld:H stdtdfetgqntr-ftpvgvvep---q--qwv---lp--dysgrdshnvhla--pavaptfpg--    Structural characterization of a gii.4 2004 norovirus  ...
3sln:H fstdtfetgqntr-ftpvgvvep---q--qwv---lp--dysgrdshnvhla--pavaptfpg--    Structural characterization of a gii.4 2004 norovirus  ...
3l81:A egalrwdlprvqg-gsqlsglfq---m--dvp---gp--p-----gl-glgp--aslsfelpr--    Crystal structure of adaptor protein complex 4 (ap-4) mu4  ...
4n2r:A klwflvsqwgsapftyrtstdpt---kvngws---ap--q-----pl-ftgk--vadsgtgpi--    Crystal structure of the alpha-l-arabinofuranosidase  ...
4n1i:A klwflvsqwgsapftyrtstdpt---kvngws---ap--q-----pl-ftgk--vadsgtgpi--    Crystal structure of the alpha-l-arabinofuranosidase  ...
2c3a:B igmlprfipenqr-tvavyslki---a--gwh---gp--k-----ap-ytstllppelpedpe--    Structure of unliganded hsv gd reveals a mechanism for  ...
1hk6:A -------hmrqpp-lvtgi-spn---e--g-----ip--w-----tk-vtir--genlgtgpt--    Ral binding domain from sec5
2bl0:A --------rrige-ivkvvqaaa---r--gw----ve--r-----kh-frqa--reksvsa----    Physarum polycephalum myosin ii regulatory domain
3cyj:A evpvygsggftsy-plrrlqeql---g--gwaaagiprvk-----mk-vgre--pekdpervraa    Crystal structure of a mandelate racemase/muconate  ...
3cbg:A agvaekislrlgp-alatleqlt---q--gkp---lp--e-----fd-lifi--dadkrnypr--    Functional and structural characterization of a  ...
3rcn:A afygaqtllqllg-paalrqapvvave--gws---vp--r-----vs-vedk--prfgyrgtm--    Crystal structure of beta-n-acetylhexosaminidase from  ...

                2         2         2         3         3         3     
                7         8         9         0         1         2     
       12345678901234567890123456789012345678901234567890123456789012345    Protein name
       ---------+---------+---------+---------+---------+---------+-----    ------------
P10175 eq--ai--------gls-v-tf---lsf--llpagwv--ly---hldnykkssaa----------    Cytochrome c oxidase subunit 8B, mitochondrial OS=Bos  ...
1occ:M*EQ--AI--------GLS-V-TF---LSF--LLPAGWV--LY---HLDNYKKS-------------×26 Structure of bovine heart cytochromE C oxidase at the fully  ...
3sjp:A eq--ll--------ffr-s-tm---mnldcllpqewv---q---hf--yqesapaqsdvallrfv    Structural characterization of a gii.4 2004 norovirus varian
2vge:A ee--gitalhnaicgan-y-si---vdf--litagan--vn---spdshgwtplhcaascndtvi    Crystal structure of thE C-terminal region of human iaspp
3skb:I eq--ll--------ffr-s-tmpn-ldc--llpqewv---q---hf--yqesapaqsdvallrfv    Structural characterization of a gii.4 2004 norovirus varian
1zjj:A ekllkm--------gid-v-ss----si--iitsglatrlymskhldpgkifviggeglvkemqa    Crystal structure of hypothetical protein ph1952 from  ...
3sej:I eq--ll--------ffr-s-tmpgnldc--llpqewv---q---hf--yqesapaqsdvallrfv    Structural characterization of a gii.4 2004 norovirus  ...
3sld:H eq--ll--------ffr-s-tmpmnldc--llpqewv---q---hf--yqesapaqsdvallrfv    Structural characterization of a gii.4 2004 norovirus  ...
3sln:H eq--ll--------ffr-s-tmpmnldc--llpqewv---q---hf--yqesapaqsdvallrfv    Structural characterization of a gii.4 2004 norovirus  ...
3l81:A ht--cs--------glq-v-rf---lrl--afphkwvrhls---hsdayviri------------    Crystal structure of adaptor protein complex 4 (ap-4) mu4  ...
4n2r:A dq--tv--------iad-d-rk---vyl--ffvadng--kv---yrtsmaigdfpanfgtasevi    Crystal structure of the alpha-l-arabinofuranosidase  ...
4n1i:A dq--tv--------iad-d-rk---vyl--ffvadng--kv---yrtsmaigdfpanfgtasevi    Crystal structure of the alpha-l-arabinofuranosidase  ...
2c3a:B ds--al--------ledpv-gt---vap--qippnwh--ip---siqdcatpyh-----------    Structure of unliganded hsv gd reveals a mechanism for  ...
1hk6:A dl---i--------glt-i-cg---hnc--lltaewm--sa---skivcrvgqakndkgdiivtt    Ral binding domain from sec5
2bl0:A -r--ii--------qdn-iray---lef--knwawwk--lf---akarpllv-------------    Physarum polycephalum myosin ii regulatory domain
3cyj:A re--ai--------ges-v-el---mvd--angaytr--kq---alywagafareagisyleepv    Crystal structure of a mandelate racemase/muconate  ...
3cbg:A yy--ei--------gln-l-lr---rgg--lmvidnv--lw---hgkvtevdpqeaqtqvlqqfn    Functional and structural characterization of a  ...
3rcn:A ld--va--------rhf-m-pk---dnv--lrfievm--am---hklnvlhlhltddqgwrmqin    Crystal structure of beta-n-acetylhexosaminidase from  ...

           3         3         3         3         3         3         3
           3         4         5         6         7         8         9
       67890123456789012345678901234567890123456789012345678901234567890    Protein name
       ----+---------+---------+---------+---------+---------+---------+    ------------
P10175 -----------------------------------------------------------------    Cytochrome c oxidase subunit 8B, mitochondrial OS=Bos  ...
1occ:M*-----------------------------------------------------------------×26 Structure of bovine heart cytochromE C oxidase at the fully  ...
3sjp:A npdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswvnqfytlapmg------------    Structural characterization of a gii.4 2004 norovirus varian
2vge:A cmalvqhgaaifattlsdgatafekcdpyregyadcatyladveqsmglmnsgavyalwdysaef    Crystal structure of thE C-terminal region of human iaspp
3skb:I npdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswvnqfytlapmg------------    Structural characterization of a gii.4 2004 norovirus varian
1zjj:A lgwgivtldearqgswkevkhvvvgldpdltyeklkyatlairngatfigtnpdatlpgeegiyp    Crystal structure of hypothetical protein ph1952 from  ...
3sej:I npdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswvnqfytlapm-------------    Structural characterization of a gii.4 2004 norovirus  ...
3sld:H npdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswvnqfytlapmg------------    Structural characterization of a gii.4 2004 norovirus  ...
3sln:H npdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswvnqfytlapmg------------    Structural characterization of a gii.4 2004 norovirus  ...
3l81:A -----------------------------------------------------------------    Crystal structure of adaptor protein complex 4 (ap-4) mu4  ...
4n2r:A lsdtqaklfeavqvytvagqnqylmiveaqgtngryfrsftansldgewkvqagsesapfagkan    Crystal structure of the alpha-l-arabinofuranosidase  ...
4n1i:A lsdtqaklfeavqvytvagqnqylmiveaqgtngryfrsftansldgewkvqagsesapfagkan    Crystal structure of the alpha-l-arabinofuranosidase  ...
2c3a:B -----------------------------------------------------------------    Structure of unliganded hsv gd reveals a mechanism for  ...
1hk6:A ksggkgtstvsfkllkpek----------------------------------------------    Ral binding domain from sec5
2bl0:A -----------------------------------------------------------------    Physarum polycephalum myosin ii regulatory domain
3cyj:A ssedreglrllrdrgpggvaiaageyewtlpqlhdlagcvdilqadvtrcggitgllrvdgicrg    Crystal structure of a mandelate racemase/muconate  ...
3cbg:A rdlaqdervrisviplgdgmtlalkk---------------------------------------    Functional and structural characterization of a  ...
3rcn:A rypkltetgawrresslgswragvfdgrphggfytqddlreivafaadrhitvipeidvpghsqa    Crystal structure of beta-n-acetylhexosaminidase from  ...

                4         4         4         4         4         4     
                0         1         2         3         4         5     
       12345678901234567890123456789012345678901234567890123456789012345    Protein name
       ---------+---------+---------+---------+---------+---------+-----    ------------
P10175 -----------------------------------------------------------------    Cytochrome c oxidase subunit 8B, mitochondrial OS=Bos  ...
1occ:M*-----------------------------------------------------------------×26 Structure of bovine heart cytochromE C oxidase at the fully  ...
3sjp:A -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus varian
2vge:A gdelsfregesvtvlrrdgpeetdwwwaalhgqegyvprnyfglfprvkp---------------    Crystal structure of thE C-terminal region of human iaspp
3skb:I -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus varian
1zjj:A gagsiiaalkvatnvepiiigkpnepmyevvremfpgeelwmvgdrldtdiafakkfgmkaimvl    Crystal structure of hypothetical protein ph1952 from  ...
3sej:I -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus  ...
3sld:H -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus  ...
3sln:H -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus  ...
3l81:A -----------------------------------------------------------------    Crystal structure of adaptor protein complex 4 (ap-4) mu4  ...
4n2r:A sgaswtndvshgdlirsnpdqtmtidpcrlqllyqgrdknkvpssydlapyrpglltlyglgle-    Crystal structure of the alpha-l-arabinofuranosidase  ...
4n1i:A sgaswtndvshgdlirsnpdqtmtidpcrlqllyqgrdknkvpssydlapyrpglltlyglgleq    Crystal structure of the alpha-l-arabinofuranosidase  ...
2c3a:B -----------------------------------------------------------------    Structure of unliganded hsv gd reveals a mechanism for  ...
1hk6:A -----------------------------------------------------------------    Ral binding domain from sec5
2bl0:A -----------------------------------------------------------------    Physarum polycephalum myosin ii regulatory domain
3cyj:A hqipfsahcapavsahaccavesllhleyfhdharverllfdgtldpeggslrpdpdrpglglel    Crystal structure of a mandelate racemase/muconate  ...
3cbg:A -----------------------------------------------------------------    Functional and structural characterization of a  ...
3rcn:A aiaaypelgagpspvevwtrwginetvlevsetslefyrnvldevveifpspwislggdevpltq    Crystal structure of beta-n-acetylhexosaminidase from  ...

           4         4         4         4         5         5         5
           6         7         8         9         0         1         2
       67890123456789012345678901234567890123456789012345678901234567890    Protein name
       ----+---------+---------+---------+---------+---------+---------+    ------------
P10175 -----------------------------------------------------------------    Cytochrome c oxidase subunit 8B, mitochondrial OS=Bos  ...
1occ:M*-----------------------------------------------------------------×26 Structure of bovine heart cytochromE C oxidase at the fully  ...
3sjp:A -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus varian
2vge:A -----------------------------------------------------------------    Crystal structure of thE C-terminal region of human iaspp
3skb:I -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus varian
1zjj:A tgvssledikkseykpdlvlpsvyelidylk----------------------------------    Crystal structure of hypothetical protein ph1952 from  ...
3sej:I -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus  ...
3sld:H -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus  ...
3sln:H -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus  ...
3l81:A -----------------------------------------------------------------    Crystal structure of adaptor protein complex 4 (ap-4) mu4  ...
4n2r:A -----------------------------------------------------------------    Crystal structure of the alpha-l-arabinofuranosidase  ...
4n1i:A klise------------------------------------------------------------    Crystal structure of the alpha-l-arabinofuranosidase  ...
2c3a:B -----------------------------------------------------------------    Structure of unliganded hsv gd reveals a mechanism for  ...
1hk6:A -----------------------------------------------------------------    Ral binding domain from sec5
2bl0:A -----------------------------------------------------------------    Physarum polycephalum myosin ii regulatory domain
3cyj:A krseagkyaa-------------------------------------------------------    Crystal structure of a mandelate racemase/muconate  ...
3cbg:A -----------------------------------------------------------------    Functional and structural characterization of a  ...
3rcn:A wqasaqaqakaaelglddvsglhswfvgqlalhlkhhgratsvwdelpdgalvaswrgyeggida    Crystal structure of beta-n-acetylhexosaminidase from  ...

                5         5         5         5         5         5     
                3         4         5         6         7         8     
       12345678901234567890123456789012345678901234567890123456789012345    Protein name
       ---------+---------+---------+---------+---------+---------+-----    ------------
P10175 -----------------------------------------------------------------    Cytochrome c oxidase subunit 8B, mitochondrial OS=Bos  ...
1occ:M*-----------------------------------------------------------------×26 Structure of bovine heart cytochromE C oxidase at the fully  ...
3sjp:A -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus varian
2vge:A -----------------------------------------------------------------    Crystal structure of thE C-terminal region of human iaspp
3skb:I -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus varian
1zjj:A -----------------------------------------------------------------    Crystal structure of hypothetical protein ph1952 from  ...
3sej:I -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus  ...
3sld:H -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus  ...
3sln:H -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus  ...
3l81:A -----------------------------------------------------------------    Crystal structure of adaptor protein complex 4 (ap-4) mu4  ...
4n2r:A -----------------------------------------------------------------    Crystal structure of the alpha-l-arabinofuranosidase  ...
4n1i:A -----------------------------------------------------------------    Crystal structure of the alpha-l-arabinofuranosidase  ...
2c3a:B -----------------------------------------------------------------    Structure of unliganded hsv gd reveals a mechanism for  ...
1hk6:A -----------------------------------------------------------------    Ral binding domain from sec5
2bl0:A -----------------------------------------------------------------    Physarum polycephalum myosin ii regulatory domain
3cyj:A -----------------------------------------------------------------    Crystal structure of a mandelate racemase/muconate  ...
3cbg:A -----------------------------------------------------------------    Functional and structural characterization of a  ...
3rcn:A lrkgydvvmcpehklyldhrqadgddepvpvgfvttlqavyefeplpgtdfpgrllgaqaniwse    Crystal structure of beta-n-acetylhexosaminidase from  ...

           5         6         6         6         6         6         6
           9         0         1         2         3         4         5
       67890123456789012345678901234567890123456789012345678901234567890    Protein name
       ----+---------+---------+---------+---------+---------+---------+    ------------
P10175 -----------------------------------------------------------------    Cytochrome c oxidase subunit 8B, mitochondrial OS=Bos  ...
1occ:M*-----------------------------------------------------------------×26 Structure of bovine heart cytochromE C oxidase at the fully  ...
3sjp:A -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus varian
2vge:A -----------------------------------------------------------------    Crystal structure of thE C-terminal region of human iaspp
3skb:I -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus varian
1zjj:A -----------------------------------------------------------------    Crystal structure of hypothetical protein ph1952 from  ...
3sej:I -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus  ...
3sld:H -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus  ...
3sln:H -----------------------------------------------------------------    Structural characterization of a gii.4 2004 norovirus  ...
3l81:A -----------------------------------------------------------------    Crystal structure of adaptor protein complex 4 (ap-4) mu4  ...
4n2r:A -----------------------------------------------------------------    Crystal structure of the alpha-l-arabinofuranosidase  ...
4n1i:A -----------------------------------------------------------------    Crystal structure of the alpha-l-arabinofuranosidase  ...
2c3a:B -----------------------------------------------------------------    Structure of unliganded hsv gd reveals a mechanism for  ...
1hk6:A -----------------------------------------------------------------    Ral binding domain from sec5
2bl0:A -----------------------------------------------------------------    Physarum polycephalum myosin ii regulatory domain
3cyj:A -----------------------------------------------------------------    Crystal structure of a mandelate racemase/muconate  ...
3cbg:A -----------------------------------------------------------------    Functional and structural characterization of a  ...
3rcn:A hldsprrvqfaafprlsaisevfwsnpagrdydefltrltgahlarleamgveyrplsgpapwqq    Crystal structure of beta-n-acetylhexosaminidase from  ...

                6      
                6      
       1234567890123456                                                     Protein name
       ---------+------                                                     ------------
P10175 ----------------                                                     Cytochrome c oxidase subunit 8B, mitochondrial OS=Bos  ...
1occ:M*----------------                                                 ×26 Structure of bovine heart cytochromE C oxidase at the fully  ...
3sjp:A ----------------                                                     Structural characterization of a gii.4 2004 norovirus varian
2vge:A ----------------                                                     Crystal structure of thE C-terminal region of human iaspp
3skb:I ----------------                                                     Structural characterization of a gii.4 2004 norovirus varian
1zjj:A ----------------                                                     Crystal structure of hypothetical protein ph1952 from  ...
3sej:I ----------------                                                     Structural characterization of a gii.4 2004 norovirus  ...
3sld:H ----------------                                                     Structural characterization of a gii.4 2004 norovirus  ...
3sln:H ----------------                                                     Structural characterization of a gii.4 2004 norovirus  ...
3l81:A ----------------                                                     Crystal structure of adaptor protein complex 4 (ap-4) mu4  ...
4n2r:A ----------------                                                     Crystal structure of the alpha-l-arabinofuranosidase  ...
4n1i:A ----------------                                                     Crystal structure of the alpha-l-arabinofuranosidase  ...
2c3a:B ----------------                                                     Structure of unliganded hsv gd reveals a mechanism for  ...
1hk6:A ----------------                                                     Ral binding domain from sec5
2bl0:A ----------------                                                     Physarum polycephalum myosin ii regulatory domain
3cyj:A ----------------                                                     Crystal structure of a mandelate racemase/muconate  ...
3cbg:A ----------------                                                     Functional and structural characterization of a  ...
3rcn:A rpgvegwkrdydaeql                                                     Crystal structure of beta-n-acetylhexosaminidase from  ...

Residue colours: black = 0, purple = 1, blue = 2, green = 3, orange = 4, red = 5 or more contacts.

Sequence listing

The listing below shows the FASTA statistics for the PDB entries that matched UniProt accession no. P10175. Ditto marks indicate identical sequences represented by a single representative sequence in the alignment above. The representative is asterisked and the names of all its duplicate sequences are indented to the right.

Structures whose names are given in purple are those that are annotated above. The parameters defining which sequences can transfer their annotations are shown at the bottom of the page where they can be altered and the alignment regenerated.

Use the checkboxes to the left of the PDB codes to exclude any sequences from the alignment Then click the SELECT button at the bottom of the page to redisplay the alignment.

Aligned sequences

  Smith-
Waterman
score
%-tage
identity
a.a.
overlap
Seq
len
z-score E-
value
  PDB
code
Protein name
1. - - - 70 - - P10175 Cytochrome c oxidase subunit 8B, mitochondrial OS=Bos taurus GN=COX8B PE=1 SV=3
2. 281 100.0% 43 43 435.3 2.9e-17 1occ:M * Structure of bovine heart cytochromE C oxidase at the fully oxidized state
3. " " " " " "  = 1oco:M *
Bovine heart cytochromE C oxidase in carbon monoxide-bound state
4. " " " " " "  = 1ocr:M *
Bovine heart cytochromE C oxidase in the fully reduced state
5. " " " " " "  = 1ocz:M *
Bovine heart cytochromE C oxidase in azide-bound state
6. " " " " " "  = 1v54:M *
Bovine heart cytochromE C oxidase at the fully oxidized stat
7. " " " " " "  = 1v55:M *
Bovine heart cytochromE C oxidase at the fully reduced state
8. " " " " " "  = 2dyr:M *
Bovine heart cytochromE C oxidase at the fully oxidized stat
9. " " " " " "  = 2dys:M *
Bovine heart cytochromE C oxidase modified by dccd
10. " " " " " "  = 2eij:M *
Bovine heart cytochromE C oxidase in the fully reduced state
11. " " " " " "  = 2eik:M *
Cadmium ion binding structure of bovine heart cytochromE C o the fully reduced state
12. " " " " " "  = 2eil:M *
Cadmium ion binding structure of bovine heart cytochromE C o the fully oxidized state
13. " " " " " "  = 2eim:M *
Zinc ion binding structure of bovine heart cytochromE C oxid fully reduced state
14. " " " " " "  = 2ein:M *
Zinc ion binding structure of bovine heart cytochromE C oxidase in the fully oxidized state
15. " " " " " "  = 2occ:M *
Bovine heart cytochromE C oxidase at the fully oxidized stat
16. " " " " " "  = 2y69:M *
Bovine heart cytochromE C oxidase re-refined with molecular oxygen
17. " " " " " "  = 2ybb:X *
Fitted model for bovine mitochondrial supercomplex i1iii2iv single particle cryo-em (emd-1876)
18. " " " " " "  = 2zxw:M *
Bovine heart cytochromE C oxidase at the fully oxidized stat ray exposure dataset)
19. " " " " " "  = 3abk:M *
Bovine heart cytochromE C oxidase at the no-bound fully redu (50k)
20. " " " " " "  = 3abl:M *
Bovine heart cytochromE C oxidase at the fully oxidized state (15-s x-ray exposure dataset)
21. " " " " " "  = 3abm:M *
Bovine heart cytochromE C oxidase at the fully oxidized state (200-s x-ray exposure dataset)
22. " " " " " "  = 3ag1:M *
Bovine heart cytochromE C oxidase in the carbon monoxide-bou reduced state at 280 k
23. " " " " " "  = 3ag2:M *
Bovine heart cytochromE C oxidase in the carbon monoxide-bou reduced state at 100 k
24. " " " " " "  = 3ag3:M *
Bovine heart cytochromE C oxidase in the nitric oxide-bound reduced state at 100 k
25. " " " " " "  = 3ag4:M *
Bovine heart cytochromE C oxidase in the cyanide ion-bound f reduced state at 100 k
26. " " " " " "  = 3asn:M *
Bovine heart cytochromE C oxidase in the fully oxidized stat at 1.7470 angstrom wavelength
27. " " " " " "  = 3aso:M *
Bovine heart cytochromE C oxidase in the fully oxidized stat at 0.9 angstrom wavelength
28. 81 32.9% 76 294 124.8 5.6 3sjp:A Structural characterization of a gii.4 2004 norovirus varian
29. 78 31.1% 61 208 122.8 7.3 2vge:A Crystal structure of thE C-terminal region of human iaspp
30. 77 34.4% 61 291 118.9 12 3skb:I Structural characterization of a gii.4 2004 norovirus varian
31. 76 32.9% 70 261 118.2 13 1zjj:A Crystal structure of hypothetical protein ph1952 from pyroco horikoshii ot3
32. 75 33.9% 62 284 116.1 17 3sej:I Structural characterization of a gii.4 2004 norovirus varian bound to secretor lewis hbga (leb)
33. 75 33.9% 62 293 115.9 18 3sld:H Structural characterization of a gii.4 2004 norovirus varian bound to a trisaccharide
34. 75 33.9% 62 292 115.9 18 3sln:H Structural characterization of a gii.4 2004 norovirus varian bound to h pentasaccharide
35. 74 41.9% 31 250 115.5 18 3l81:A Crystal structure of adaptor protein complex 4 (ap-4) mu4 su terminal domain, in complex with a sorting peptide from the precursor protein (app)
36. 74 35.0% 40 306 114.1 22 4n2r:A Crystal structure of the alpha-l-arabinofuranosidase umabf62 ustilago maydis in complex with l-arabinofuranose
37. 74 35.0% 40 312 114.0 23 4n1i:A Crystal structure of the alpha-l-arabinofuranosidase umabf62 ustilago maidys
38. 73 28.3% 53 274 113.4 24 2c3a:B Structure of unliganded hsv gd reveals a mechanism for receptor-mediated activation of virus entry
39. 67 28.6% 56 95 112.0 29 1hk6:A Ral binding domain from sec5
40. 65 27.6% 58 63 111.9 30 2bl0:A Physarum polycephalum myosin ii regulatory domain
41. 73 35.4% 48 359 111.5 31 3cyj:A Crystal structure of a mandelate racemase/muconate lactonizi like protein from rubrobacter xylanophilus
42. 70 27.1% 59 218 110.6 35 3cbg:A Functional and structural characterization of a cationdependent o-methyltransferase from the cyanobacterium synechocystis sp. Strain pcc 6803
43. 74 37.5% 32 525 110.3 36 3rcn:A Crystal structure of beta-n-acetylhexosaminidase from arthro aurescens

Number of sequences: 43

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Annotation parameters

The parameters below were used in determining which structural annotations could be transferred on to the target sequence. You can change the parameters and regenerate the SAS alignments and annotation by pressing the Rerun button.

Min. seq. identity:   Min. seq. overlap   Max. E-value

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