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2nvz

Structure Title:  Rna polymerase ii elongation complex with utp, updated 11/2006
Structure Header:  Transcription/dna/rna
Associated ECs:  2.7.7.6 [S]

Chains:
Code   Molecule
1.   A   Dna-directed rna polymerase ii largest subunit,  current chain [S]
2. B   Dna-directed rna polymerase ii 140 kda polypeptide
3. C   Dna-directed rna polymerase ii 45 kda polypeptide
4. F   Dna-directed rna polymerases i, ii, and iii 23 kda polypeptide
5. H   Dna-directed rna polymerases i, ii, and iii 14.5 kda polypeptide
6. I   Dna-directed rna polymerase ii subunit 9
7. J   Dna-directed rna polymerases i/ii/iii subunit 10
8. K   Dna-directed rna polymerase ii 13.6 kda polypeptide
9. L   Dna-directed rna polymerases i, ii, and iii 7.7 kda polypeptide

Change domain classification: CATH | SCOP | Pfam


Domain Family Family Name Ligand
bound by
> 1 domain
PDB Ligand (code residue chain, name) Cognate Ligand Similarity
1. RNA_pol_Rpb1_1 [S] RNA polymerase Rpb1, domain 1 N ZN 1506 A, Zinc ion  [C][S]
2. RNA_pol_Rpb1_2 [S] RNA polymerase Rpb1, domain 2 N MG 2001 A, Magnesium ion  [C][S]
Y MG 2002 -, Magnesium ion  [C][S]
Y UTP 3000 -, Uridine 5'-triphosphate  [C][S] UTP  [R][S][L]
CTP  [R][S][L]
Nucleoside triphosphate  [R][S][L]
ATP  [R][S][L]
GTP  [R][S][L]
1
0.93
0.7
0.58
0.56
3. RNA_pol_Rpb1_3 [S] RNA polymerase Rpb1, domain 3
4. RNA_pol_Rpb1_4 [S] RNA polymerase Rpb1, domain 4
5. RNA_pol_Rpb1_5 [S] RNA polymerase Rpb1, domain 5 Y UTP 3000 -, Uridine 5'-triphosphate  [C][S] UTP  [R][S][L]
CTP  [R][S][L]
Nucleoside triphosphate  [R][S][L]
ATP  [R][S][L]
GTP  [R][S][L]
1
0.93
0.7
0.58
0.56
6. RNA_pol_Rpb1_6 [S] RNA polymerase Rpb1, domain 6
7. RNA_pol_Rpb1_7 [S] RNA polymerase Rpb1, domain 7
8. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
9. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
10. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
11. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
12. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
13. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
14. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
15. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
16. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
17. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
18. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
19. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
20. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
21. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat


This page was generated for a nonameric assembly, available quaternary structure assemblies are:
1. Nonameric, current assembly
2. Monomeric
3. Monomeric