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1twa

Structure Title:  Rna polymerase ii complexed with atp
Structure Header:  Transcription
Associated ECs:  2.7.7.6 [S]

Chains:
Code   Molecule
1. A   Dna-directed rna polymerase ii largest subunit
2. A   Dna-directed rna polymerase ii largest subunit
3.   A   Dna-directed rna polymerase ii largest subunit,  current chain [S]
4. A   Dna-directed rna polymerase ii largest subunit
5. B   Dna-directed rna polymerase ii 140 kda polypeptide
6. B   Dna-directed rna polymerase ii 140 kda polypeptide
7. B   Dna-directed rna polymerase ii 140 kda polypeptide
8. B   Dna-directed rna polymerase ii 140 kda polypeptide
9. C   Dna-directed rna polymerase ii 45 kda polypeptide
10. C   Dna-directed rna polymerase ii 45 kda polypeptide
11. C   Dna-directed rna polymerase ii 45 kda polypeptide
12. C   Dna-directed rna polymerase ii 45 kda polypeptide
13. E   Dna-directed rna polymerases i, ii, and iii 27 kda polypeptide
14. E   Dna-directed rna polymerases i, ii, and iii 27 kda polypeptide
15. E   Dna-directed rna polymerases i, ii, and iii 27 kda polypeptide
16. E   Dna-directed rna polymerases i, ii, and iii 27 kda polypeptide
17. F   Dna-directed rna polymerases i, ii, and iii 23 kda polypeptide
18. F   Dna-directed rna polymerases i, ii, and iii 23 kda polypeptide
19. F   Dna-directed rna polymerases i, ii, and iii 23 kda polypeptide
20. F   Dna-directed rna polymerases i, ii, and iii 23 kda polypeptide
21. H   Dna-directed rna polymerases i, ii, and iii 14.5 kda polypeptide
22. H   Dna-directed rna polymerases i, ii, and iii 14.5 kda polypeptide
23. H   Dna-directed rna polymerases i, ii, and iii 14.5 kda polypeptide
24. H   Dna-directed rna polymerases i, ii, and iii 14.5 kda polypeptide
25. I   Dna-directed rna polymerase ii 14.2 kda polypeptide
26. I   Dna-directed rna polymerase ii 14.2 kda polypeptide
27. I   Dna-directed rna polymerase ii 14.2 kda polypeptide
28. I   Dna-directed rna polymerase ii 14.2 kda polypeptide
29. J   Dna-directed rna polymerases i, ii, and iii 8.3 kda polypeptide
30. J   Dna-directed rna polymerases i, ii, and iii 8.3 kda polypeptide
31. J   Dna-directed rna polymerases i, ii, and iii 8.3 kda polypeptide
32. J   Dna-directed rna polymerases i, ii, and iii 8.3 kda polypeptide
33. K   Dna-directed rna polymerase ii 13.6 kda polypeptide
34. K   Dna-directed rna polymerase ii 13.6 kda polypeptide
35. K   Dna-directed rna polymerase ii 13.6 kda polypeptide
36. K   Dna-directed rna polymerase ii 13.6 kda polypeptide
37. L   Dna-directed rna polymerases i, ii, and iii 7.7 kda polypeptide
38. L   Dna-directed rna polymerases i, ii, and iii 7.7 kda polypeptide
39. L   Dna-directed rna polymerases i, ii, and iii 7.7 kda polypeptide
40. L   Dna-directed rna polymerases i, ii, and iii 7.7 kda polypeptide

Change domain classification: CATH | SCOP | Pfam


Domain Family Family Name Ligand
bound by
> 1 domain
PDB Ligand (code residue chain, name) Cognate Ligand Similarity
1. RNA_pol_Rpb1_1 [S] RNA polymerase Rpb1, domain 1 N ZN 3006 A, Zinc ion  [C][S]
N ZN 3008 A, Zinc ion  [C][S]
2. RNA_pol_Rpb1_2 [S] RNA polymerase Rpb1, domain 2 Y ATP 1 -, Adenosine-5'-triphosphate  [C][S] ATP  [R][S][L]
GTP  [R][S][L]
Nucleoside triphosphate  [R][S][L]
UTP  [R][S][L]
CTP  [R][S][L]
1
0.7
0.66
0.58
0.58
N MN 3009 -, Manganese (ii) ion  [C][S]
Y MN 3010 -, Manganese (ii) ion  [C][S]
3. RNA_pol_Rpb1_3 [S] RNA polymerase Rpb1, domain 3
4. RNA_pol_Rpb1_4 [S] RNA polymerase Rpb1, domain 4
5. RNA_pol_Rpb1_5 [S] RNA polymerase Rpb1, domain 5
6. RNA_pol_Rpb1_6 [S] RNA polymerase Rpb1, domain 6
7. RNA_pol_Rpb1_7 [S] RNA polymerase Rpb1, domain 7
8. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
9. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
10. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
11. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
12. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
13. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
14. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
15. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
16. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
17. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
18. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
19. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
20. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat
21. RNA_pol_Rpb1_R [S] RNA polymerase Rpb1 C-terminal repeat


This page was generated for a 40mer assembly, no other alternative quaternary structural assemblies exist.