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Figure 9.
FIG. 9. Alignment of the ClpS sequences with the N-terminal
domain of eClpA. NT-eClpA denotes the N-terminal domain of eClpA
(PDB code 1K6K [PDB]
); COG542-eClpA indicates the consensus N-terminal domain of
eClpA structures found by BLAST (NCBI CD, COG0542.1,ClpA;
PSSM-Idm 10413); N domain denotes the Clp N-terminal domain
found in one or two copies at the N terminus of ClpA and ClpB
proteins from bacteria or eukaryotes. Color code: positions with
polar residue conservation in blue; charge conservation in red,
and hydrophobicity conservation in green. Conserved residues are
shown in boldface. The magenta (LL1) and orange (LL2) rectangles
indicate residues from two loop regions on ClpS1,2. The
equivalent loops in NT-eClpA possibly provide most of the
interacting surface when bound to eClpS.
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