|
Figure 7.
Figure 7. Two-dimensional schematic representation of the
contacts observed in the NHERF PDZ1 binding pocket. PDZ1
residues (orange) making hydrogen bonds and hydrophobic contacts
with the peptide ligand (purple) are shown in ball-and-stick
representation. Carbon atoms are shown in white, oxygen atoms in
red, and nitrogen atoms in blue. Water molecules are shown as
green spheres. Hydrogen bonds are depicted as broken lines and
numbers indicate distances in Å. Val76 involved in
hydrophobic interaction with the C^d2 atom of Leu0 is shown as
an arc with radial spokes. The Figure was generated using the
program LIGPLOT[49].
|
