Figure 3 - full size

 

Figure 3.
Architecture of the engineered loop preceding the αC-helix in the CDK4 (cyan)/cyclin D1 (orange) structure. (A) Akin to CDK2 and CDK6 (see Fig. S4) the apex of the loop is stabilized by hydrogen bonds from the loop main chain to a highly-conserved lysine (Lys[D1]112) and glutamate (Glu[D1]141) on the cyclin. The second glutamate (Glu[K4]44′) from the GE′E′G insertion mimics the interactions formed by the glutamate in the CDK6 structure. The loop is further stabilized by intramolecular H-bonds, which are not observed in either the CDK2 or CDK6 structures. A cyclin D1 Lys[D1]112–Glu mutation results in aberrant CDK4/cyclin D1 complex assembly and activation. (B) Residues in the vicinity of cyclin D1 (orange) Lys[D1]114. The Lys[D1]114–Glu mutation results in defective CDK4/cyclin D1 complex formation. Lys[D1]114 sits within an acidic environment formed by Glu[D1]74, Glu[D1]75, Glu[D1]76, Asp[D1]159, and Glu[D1]162. It would be anticipated that introduction of an additional negative charge into this environment would be highly destabilizing and significantly perturb correct CDK/cyclin association.