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Pfam domain PF02813

Pfam domain PF02813

Pfam domain:   
  PF02813 - Retroviral M domain  

Below is the list of protein structures in the PDB containing Pfam domain PF02813.

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Structures in the PDB containing this domain: 42

  Pfam domain
architecture
UniProt
accession
UniProt id Protein name PDB structures
1.
O92954 GAG_RSVSB Gag-Pro polyprotein (E.C. 3.4.23.-)
1d1dA.
 
P03322 GAG_RSVP Gag-Pro polyprotein (E.C. 3.4.23.-)
1a6sA, 1baiA, 1em9A, 1eoqA, 1p7nA, 2rspA, 2x8qA, 3g0vA, 3g1gA, 3g1iA, 3g21A, 3g26A, 3g28A, 3g29A.
 
Q77YH0 Q77YH0_9RETR Pr76 polyprotein
2ihxA.
2.
O92956 POL_RSVSB Gag-Pro-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4, 2.7.7.49, 2.7.7.7, 3.1.26.4)
1a5vA, 1a5wA, 1a5xA, 1asuA, 1asvA, 1aswA, 1cxqA, 1cxuA, 1cz9A, 1czbA, 1vsdA, 1vseA, 1vsfA, 1vshA, 1vsiA, 1vsjA, 1vskA, 1vslA, 1vsmA, 3o4nA, 3o4qA.
 
P03354 POL_RSVP Gag-Pro-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4, 2.7.7.49, 2.7.7.7, 3.1.26.4)
1c0mA, 1c1aA, 3tirA, 4fw1A, 4fw2A.

List of Pfam domains

  Pfam code Pfam id Description
PF02813 Retro_M Retroviral M domain
PF00075 RNase_H RNase H
PF00077 RVP Retroviral aspartyl protease
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase)
PF00098 zf-CCHC Zinc knuckle
PF00552 IN_DBD_C Integrase DNA binding domain
PF00607 Gag_p24 gag gene protein p24 (core nucleocapsid protein)
PF00665 rve Integrase core domain
PF02022 Integrase_Zn Integrase Zinc binding domain

 

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