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Pfam domain PF01471

Pfam domain PF01471

Pfam domain:   
  PF01471 - Putative peptidoglycan binding domain  

Below is the list of protein structures in the PDB containing Pfam domain PF01471.

+/- Key to table

Structures in the PDB containing this domain: 243

  Pfam domain
architecture
UniProt
accession
UniProt id Protein name PDB structures
1.
P22894 MMP8_HUMAN Neutrophil collagenase (E.C. 3.4.24.34)
1a85A, 1a86A, 1bzsA, 1i73A, 1i76A, 1janA, 1jaoA, 1japA, 1jaqA, 1jh1A, 1jj9A, 1kbcA, 1mmbA, 1mncA, 1zp5A, 1zs0A, 1zvxA, 2oy2A, 2oy4A, 3dngA, 3dpeA, 3dpfA, 3tt4A.
 
O60882 MMP20_HUMAN Matrix metalloproteinase-20 (E.C. 3.4.24.-)
2jsdA.
2.
P39900 MMP12_HUMAN Macrophage metalloelastase (E.C. 3.4.24.65)
1jizA, 1jk3A, 1os2A, 1os9A, 1rmzA, 1rosA, 1uttA, 1utzA, 1y93A, 1ycmA, 1z3jA, 2hu6A, 2jxyA, 2k2gA, 2k9cA, 2krjA, 2oxuA, 2oxwA, 2oxzA, 2pojA, 2w0dA, 2wo8A, 2wo9A, 2woaA, 2z2dA, 3ba0A, 3ehxA, 3ehyA, 3f15A, 3f16A, 3f17A, 3f18A, 3f19A, 3f1aA, 3likA, 3lilA, 3lirA, 3ljgA, 3lk8A, 3lkaA, 3n2uA, 3n2vA, 3nx7A, 3rtsA, 3rttA, 3rtuA, 3ts4A, 3tskA, 3uvcA, 4efsA, 4gqlA, 4gr0A, 4gr3A, 4gr8A, 4guyA, 4h30A, 4h49A, 4h76A, 4h84A, 4i03A, 4ijoA.
 
P08254 MMP3_HUMAN Stromelysin-1 (E.C. 3.4.24.17)
1b3dA, 1b8yA, 1biwA, 1bm6A, 1bqoA, 1c3iA, 1c8tA, 1caqA, 1cizA, 1cqrA, 1d5jA, 1d7xA, 1d8fA, 1d8mA, 1g05A, 1g49A, 1g4kA, 1hfsA, 1hy7A, 1kn8A, 1m1wA, 1oo9A, 1qiaA, 1qicA, 1slmA, 1slnA, 1ueaA, 1umsA, 1umtA, 1usnA, 2d1oA, 2jnpA, 2jt5A, 2jt6A, 2srtA, 2usnA, 3ohlA, 3ohoA, 3usnA, 4dpeA, 4g9lA, 4ja1A.
 
P33435 MMP13_MOUSE Collagenase 3 (E.C. 3.4.24.-)
1cxvA.
 
P09238 MMP10_HUMAN Stromelysin-2 (E.C. 3.4.24.22)
1q3aA, 3v96B, 4ilwD.
 
P03956 MMP1_HUMAN Interstitial collagenase (E.C. 3.4.24.7)
1aykA, 1cgeA, 1cgfA, 1cglA, 1hfcA, 1su3A, 2aykA, 2cltA, 2j0tA, 2tclA, 3aykA, 3shiA, 4auoA, 4aykA, 966cA.
 
P21692 MMP1_PIG Interstitial collagenase (E.C. 3.4.24.7)
1fblA.
 
Q28397 MMP3_HORSE Stromelysin-1 (E.C. 3.4.24.17)
1l9iA.
 
P45452 MMP13_HUMAN Collagenase 3 (E.C. 3.4.24.-)
1eubA, 1flsA, 1fm1A, 1pexA, 1uc1A, 1xucA, 1xudA, 1xurA, 1youA, 1ztqA, 2d1nA, 2e2dA, 2ow9A, 2ozrA, 2pjtA, 2yigA, 3elmA, 3i7gA, 3i7iA, 3kecA, 3kejA, 3kekA, 3kryA, 3ljzA, 3o2xA, 3tvcA, 3zxhA, 456cA, 4a7bA, 4fu4A, 4fvlA, 4g0dA, 4jp4A, 4jpaA, 830cA.
3.
P51512 MMP16_HUMAN Matrix metalloproteinase-16 (E.C. 3.4.24.-)
1rm8A.
 
P50281 MMP14_HUMAN Matrix metalloproteinase-14 (E.C. 3.4.24.80)
1bqqM, 1buvM, 3c7xA, 3ma2D.
4.
P09237 MMP7_HUMAN Matrilysin (E.C. 3.4.24.23)
1mmpA, 1mmqA, 1mmrA, 2ddyA, 2y6cA, 2y6dA.
5.
P08253 MMP2_HUMAN 72 kDa type IV collagenase (E.C. 3.4.24.24)
1ck7A, 1cxwA, 1eakA, 1genA, 1gxdA, 1hovA, 1j7mA, 1ks0A, 1qibA, 1rtgA, 3ayuA.
6.
Q8SD18 Q8SD18_BPDPK PHIKZ144
3bkhA, 3bkvA.
7.
D1BWR1 D1BWR1_XYLCX ErfK/YbiS/YcfS/YnhG family protein
4lpqA.
8.
P0A3V0 SLEB_BACCR Spore cortex-lytic enzyme
4f55A.
 
Q81PQ3 Q81PQ3_BACAN Spore cortex-lytic enzyme prepeptide
4fetB.
9.
P00733 CBPM_STRAL Zinc D-Ala-D-Ala carboxypeptidase (E.C. 3.4.17.14)
1lbuA.
10.
Q9HT86 Q9HT86_PSEAE AmpDh2
4bj4A, 4bolA, 4bpaA.
11.
Q8DEG9 Q8DEG9_VIBVU General secretion pathway protein A
4g54A.
12.
P14780 MMP9_HUMAN Matrix metalloproteinase-9 (E.C. 3.4.24.35)
1gkcA, 1gkdA, 1itvA, 1l6jA, 1lkgA, 2ovxA, 2ovzA, 2ow0A, 2ow1A, 2ow2A, 4h1qA, 4h2eA, 4h3xA, 4h82A, 4hmaA, 4jijA, 4jqgA.
13.
P39800 XLYA_BACSU N-acetylmuramoyl-L-alanine amidase XlyA (E.C. 3.5.1.28)
3hmaA, 3hmbA, 3rdrA.
14.
Q9KN42 Q9KN42_VIBCH VgrG protein
4nooA, 4nsoA.
15.
O35002 CTPB_BACSU Carboxy-terminal processing protease CtpB (E.C. 3.4.21.102)
4c2cA, 4c2dA, 4c2eA, 4c2fA, 4c2gA, 4c2hA.

List of Pfam domains

  Pfam code Pfam id Description
PF01471 PG_binding_1 Putative peptidoglycan binding domain
PF00040 fn2 Fibronectin type II domain
PF00045 Hemopexin Hemopexin
PF00413 Peptidase_M10 Matrixin
PF01464 SLT Transglycosylase SLT domain
PF01476 LysM LysM domain
PF01510 Amidase_2 N-acetylmuramoyl-L-alanine amidase
PF03572 Peptidase_S41 Peptidase family S41
PF03734 YkuD L,D-transpeptidase catalytic domain
PF04717 Phage_base_V Phage-related baseplate assembly protein
PF04886 PT PT repeat
PF05954 Phage_GPD Phage late control gene D protein (GPD)
PF07486 Hydrolase_2 Cell Wall Hydrolase
PF08291 Peptidase_M15_3 Peptidase M15
PF11857 DUF3377 Domain of unknown function (DUF3377)
PF13180 PDZ_2 PDZ domain
PF13401 AAA_22 AAA domain

 

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