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Pfam domain PF00505

Pfam domain PF00505

Pfam domain:   
  PF00505 - HMG (high mobility group) box  

Below is the list of protein structures in the PDB containing Pfam domain PF00505.

+/- Key to table

Structures in the PDB containing this domain: 89

  Pfam domain
architecture
UniProt
accession
UniProt id Protein name PDB structures
1.
Q05783 HMGD_DROME High mobility group protein D
1e7jA, 1hmaA, 1qrvA, 3nm9A.
 
Q66JW3 TOX_MOUSE Thymocyte selection-associated high mobility group box protein TOX
2co9A.
 
Q8IB14 Q8IB14_PLAF7 High mobility group protein
2mrcA.
 
P11632 NHP6A_YEAST Non-histone chromosomal protein 6A
1cg7A, 1j5nA, 1lwmA.
 
Q06831 SOX4_MOUSE Transcription factor SOX-4
3u2bC.
 
P40632 NHP1_BABBO High mobility group protein homolog NHP1
2lhjA.
 
Q05066 SRY_HUMAN Sex-determining region Y protein
1hryA, 1hrzA, 1j46A, 1j47A, 2gzkA.
2.
Q9Z104 HM20B_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related
2crjA.
3.
P35710 SOX5_MOUSE Transcription factor SOX-5
1i11A.
4.
Q00059 TFAM_HUMAN Transcription factor A, mitochondrial
3fghA, 3tmmA, 3tq6A, 4nnuA, 4nodA.
5.
P27782 LEF1_MOUSE Lymphoid enhancer-binding factor 1
1lefA, 2lefA, 3ouwB, 3ouxB.
 
Q9NQB0 TF7L2_HUMAN Transcription factor 7-like 2
1jdhB, 1jpwD, 2gl7B.
6.
Q8R316 HBP1_MOUSE HMG box-containing protein 1
1s5rA, 1v06A.
 
O60381 HBP1_HUMAN HMG box-containing protein 1
2e6oA, 3qveA.
7.
P09429 HMGB1_HUMAN High mobility group protein B1
2ly4A, 2rtuA, 2yrqA.
 
P07156 HMGB1_CRIGR High mobility group protein B1
1hsmA, 1hsnA, 1nhmA, 1nhnA.
 
P63159 HMGB1_RAT High mobility group protein B1
1aabA, 1cktA, 1hmeA, 1hmfA, 2gzkA.
 
P17741 HMGB2_PIG High mobility group protein B2
1j3cA, 1j3dA, 1j3xA.
 
O15347 HMGB3_HUMAN High mobility group protein B3
2eqzA, 2yqiA.
8.
P48431 SOX2_HUMAN Transcription factor SOX-2
1o4xB, 2le4A.
 
P48432 SOX2_MOUSE Transcription factor SOX-2
1gt0D.
9.
P70062 T7L1A_XENLA Transcription factor 7-like 1-A
1g3jB.
10.
P48436 SOX9_HUMAN Transcription factor SOX-9
1s9mA, 4euwA.
11.
Q61473 SOX17_MOUSE Transcription factor SOX-17
3f27D.
 
Q9H6I2 SOX17_HUMAN Transcription factor SOX-17
2yulA, 4a3nA.
12.
Q8VBW5 BBX_MOUSE HMG box transcription factor BBX
1wz6A.
13.
Q08945 SSRP1_HUMAN FACT complex subunit SSRP1
4ifsA.
 
Q05344 SSRP1_DROME FACT complex subunit Ssrp1
1wxlA.
14.
P54277 PMS1_HUMAN PMS1 protein homolog 1
2cs1A.
15.
Q96RK0 CIC_HUMAN Protein capicua homolog
2m41A, 4j2jD, 4j2lC.
16.
P25976 UBF1_MOUSE Nucleolar transcription factor 1
1v63A, 1v64A, 1wgfA.
 
P17480 UBF1_HUMAN Nucleolar transcription factor 1
1k99A, 1l8yA, 1l8zA, 2hdzA.
17.
P23497 SP100_HUMAN Nuclear autoantigen Sp-100
1h5pA.
18.
O75717 WDHD1_HUMAN WD repeat and HMG-box DNA-binding protein 1
2d7lA.
19.
Q86U86 PB1_HUMAN Protein polybromo-1
2ktbB, 3g0jA, 3hmfA, 3iu5A, 3iu6A, 3k2jA, 3ljwA, 3mb4A, 3tlpA, 4q0nA, 4q0oA.
 
Q8BSQ9 PB1_MOUSE Protein polybromo-1
2yqdA.
 
Q90941 PB1_CHICK Protein polybromo-1
1w4sA.

List of Pfam domains

  Pfam code Pfam id Description
PF00505 HMG_box HMG (high mobility group) box
PF00400 WD40 WD domain, G-beta repeat
PF00439 Bromodomain Bromodomain
PF01119 DNA_mis_repair DNA mismatch repair protein, C-terminal domain
PF01342 SAND SAND domain
PF01426 BAH BAH domain
PF02518 HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
PF03172 Sp100 Sp100 domain
PF03531 SSrecog Structure-specific recognition protein (SSRP1)
PF08347 CTNNB1_binding N-terminal CTNNB1 binding
PF08512 Rtt106 Histone chaperone Rttp106-like
PF08517 AXH Ataxin-1 and HBP1 module (AXH)
PF08662 eIF2A Eukaryotic translation initiation factor eIF2A
PF09011 HMG_box_2 HMG-box domain
PF09667 DUF2028 Domain of unknown function (DUF2028)
PF12067 Sox_C_TAD Sox C-terminal transactivation domain
PF12336 SOXp SOX transcription factor
PF12341 DUF3639 Protein of unknown function (DUF3639)
PF12444 Sox_N Sox developmental protein N terminal
PF14887 HMG_box_5 HMG (high mobility group) box 5
PB000543
PB001904
PB002465
PB008235
PB009245
PB010570
PB010576
PB012097
PB012390
PB014124
PB018393
PB020111
PB028700
PB029985
PB041802
PB182547

 

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