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Pfam domain PF00476

Pfam domain PF00476

Pfam domain:   
  PF00476 - DNA polymerase family A  

Below is the list of protein structures in the PDB containing Pfam domain PF00476.

+/- Key to table

Structures in the PDB containing this domain: 179

  Pfam domain
architecture
UniProt
accession
UniProt id Protein name PDB structures
1.
P54098 DPOG1_HUMAN DNA polymerase subunit gamma-1 (E.C. 2.7.7.7)
3ikmA.
2.
E1C9K5 E1C9K5_GEOSE DNA polymerase {ECO:0000256|RuleBase:RU004460} (E.C. 2.7.7.7 {ECO:0000256|RuleBase:RU004460})
2xo7A, 2xy5A, 2xy6A, 2xy7A, 2y1iA, 2y1jA, 4b9lA, 4b9mA, 4b9nA, 4b9sA, 4b9tA, 4b9uA, 4b9vA, 4dsiA, 4dsjA, 4dskA, 4dslA, 4dwiA.
3.
P00581 DPOL_BPT7 DNA-directed DNA polymerase (E.C. 2.7.7.7)
1skrA, 1sksA, 1skwA, 1sl0A, 1sl1A, 1sl2A, 1t7pA, 1t8eA, 1tk0A, 1tk5A, 1tk8A, 1tkdA, 1x9mA, 1x9sA, 1x9wA, 1zyqA, 2ajqA.
4.
Q45458 Q45458_GEOSE DNA polymerase {ECO:0000256|RuleBase:RU004460} (E.C. 2.7.7.7 {ECO:0000256|RuleBase:RU004460})
2hhqA, 2hhsA, 2hhtA, 2hvhA, 2hw3A.
5.
C9RTX7 C9RTX7_GEOSY DNA polymerase {ECO:0000256|RuleBase:RU004460} (E.C. 2.7.7.7 {ECO:0000256|RuleBase:RU004460})
3tanA, 3tapA, 3taqA, 3tarA, 3thvA, 3ti0A.
 
P52026 DPO1_GEOSE DNA polymerase I (E.C. 2.7.7.7)
1l3sA, 1l3tA, 1l3uA, 1l3vA, 1l5uA, 1lv5A, 1njxA, 1njyA, 1njzA, 1nk0A, 1nk4A, 1nk5A, 1nk6A, 1nk7A, 1nk8A, 1nk9A, 1nkbA, 1nkcA, 1nkeA, 1u45A, 1u47A, 1u48A, 1u49A, 1u4bA, 1ua1A, 1xc9A, 1xwlA, 2bdpA, 3bdpA, 3eyzA, 3ez5A, 4bdpA.
 
Q04957 DPO1_BACCA DNA polymerase I (E.C. 2.7.7.7)
2hhxA.
 
Q5KWC1 Q5KWC1_GEOKA DNA polymerase {ECO:0000256|RuleBase:RU004460} (E.C. 2.7.7.7 {ECO:0000256|RuleBase:RU004460})
1njwA, 1ua0A, 2hhqA, 2hhsA, 2hhtA, 2hhuA, 2hhvA, 2hhwA, 2hhxA, 2hvhA, 2hviA, 2hw3A, 3hp6A, 3pv8A, 3px0A, 3px4A, 3px6A, 4dqiA, 4dqpA, 4dqqA, 4dqrA, 4dqsA, 4ds4A, 4ds5A, 4dseA, 4dsfA, 4e0dA, 4ez6A, 4ez9A, 4f2rA, 4f2sA, 4f3oA, 4f4kA, 4f8rA.
6.
P00582 DPO1_ECOLI DNA polymerase I (E.C. 2.7.7.7)
1d8yA, 1d9dA, 1d9fA, 1dpiA, 1kfdA, 1kfsA, 1klnA, 1krpA, 1kspA, 1qslA, 2kfnA, 2kfzA, 2kzmA, 2kzzA.
7.
P19821 DPO1_THEAQ DNA polymerase I, thermostable (E.C. 2.7.7.7)
1bgxT, 1cmwA, 1jxeA, 1ktqA, 1qssA, 1qsyA, 1qtmA, 1taqA, 1tauA, 2ktqA, 3ktqA, 3lwlA, 3lwmA, 3m8rA, 3m8sA, 3ojsA, 3ojuA, 3po4A, 3po5A, 3py8A, 3rr7A, 3rr8A, 3rrgA, 3rrhA, 3rtvA, 3sv3A, 3sv4A, 3syzA, 3sz2A, 3t3fA, 4bwjA, 4bwmA, 4c8kA, 4c8lA, 4c8mA, 4c8nA, 4c8oA, 4cchA, 4df4A, 4df8A, 4dfjA, 4dfkA, 4dfmA, 4dfpA, 4dleA, 4dlgA, 4eltA, 4eluA, 4elvA, 4ktqA, 5ktqA.

List of Pfam domains

  Pfam code Pfam id Description
PF00476 DNA_pol_A DNA polymerase family A
PF01367 5_3_exonuc 5'-3' exonuclease, C-terminal SAM fold
PF01612 DNA_pol_A_exo1 3'-5' exonuclease
PF02739 5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain
PF09281 Taq-exonuc Taq polymerase, exonuclease
PF13482 RNase_H_2 RNase_H superfamily
PB002541
PB014078
PB019412

 

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