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Pfam domain PF00240

Pfam domain PF00240

Pfam domain:   
  PF00240 - Ubiquitin family  

Below is the list of protein structures in the PDB containing Pfam domain PF00240.

+/- Key to table

Structures in the PDB containing this domain: 626

  Pfam domain
architecture
UniProt
accession
UniProt id Protein name PDB structures
1.
Q15370 ELOB_HUMAN Transcription elongation factor B polypeptide 2
1lm8B, 1lqbA, 1vcbA, 2c9wB, 2izvB, 2jz3B, 2ma9B, 2xaiC, 3dcgA, 3zkjC, 3zngC, 3zrcA, 3zrfA, 3ztcA, 3ztdA, 3zunA, 4ajyB, 4awjA, 4b95A, 4b9kA, 4bksA, 4bktA, 4n9fX, 4w9cA, 4w9dA, 4w9eA, 4w9fA, 4w9gA, 4w9hA, 4w9iA, 4w9jA, 4w9kA, 4w9lA, 4wqoB.
 
C4M760 C4M760_ENTHI Ubiquitin {ECO:0000313|EMBL:CAA67177.1}
4gswA, 4gu2A.
 
Q3V209 TMUB2_MOUSE Transmembrane and ubiquitin-like domain-containing protein 2
1wiaA.
 
Q9M0W8 Q9M0W8_ARATH Putative uncharacterized protein AT4g05270 {ECO:0000313|EMBL:CAB81069.1}
2kk8A.
 
Q9BZL1 UBL5_HUMAN Ubiquitin-like protein 5
1p0rA, 4pyuA.
 
Q584D3 Q584D3_TRYB2 Ubiquitin, putative {ECO:0000313|EMBL:AAX79072.1}
2lrwA.
 
Q15843 NEDD8_HUMAN NEDD8
1nddA, 1r4mI, 1r4nI, 1xt9B, 2bkrB, 2ko3A, 2nvuI, 3dbhI, 3dblI, 3dbrI, 3dqvA, 3gznI, 4f8cB, 4fbjB, 4hcpB, 4p5oK.
 
Q12306 SMT3_YEAST Ubiquitin-like protein SMT3
1euvB, 1l2nA, 2ekeC, 3pgeA, 3qhtA, 3tixA, 3v60A, 3v61A, 3v62A, 3vawA.
 
P62869 ELOB_MOUSE Transcription elongation factor B polypeptide 2
2fnjB, 4jghB.
 
P11441 UBL4A_HUMAN Ubiquitin-like protein 4A
2dziA, 4wwrB, 4x86A.
 
Q9BSE4 HERP2_HUMAN Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein
2kdbA.
 
Q78JW9 UBFD1_MOUSE Ubiquitin domain-containing protein UBFD1
1v86A.
 
Q9PST8 Q9PST8_CHICK Polyubiquitin {ECO:0000313|EMBL:AAB39514.1}
1yiwA, 2fcqA.
 
Q9EPV8 UBL5_MOUSE Ubiquitin-like protein 5
1uh6A.
 
P35544 UBIM_HUMAN Ubiquitin-like protein FUBI
2l7rA.
 
Q12285 MDY2_YEAST Ubiquitin-like protein MDY2
2lnzA, 2lxaA, 2lxcA, 2wpvB, 3lkuB, 3vejA, 3zdmC, 4a20A, 4aswC, 4gocA, 4pwxF.
 
Q6Q546 HUB1_YEAST Ubiquitin-like modifier HUB1
1m94A, 3pluA, 3plvA.
2.
Q8WUN7 UBTD2_HUMAN Ubiquitin domain-containing protein 2
1ttnA, 2ksnA.
3.
Q14DL0 UBQLN_MOUSE Ubiquilin-like protein
2dnaA.
4.
Q9ZV63 Q9ZV63_ARATH Putative uncharacterized protein At2g32350 {ECO:0000313|EMBL:AAC69943.1}
2kanA.
5.
Q15011 HERP1_HUMAN Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein
1wgdA.
6.
P62972 UBIQP_XENLA Polyubiquitin
2k39A, 2kdeB.
 
F5H747 F5H747_HUMAN Polyubiquitin-C {ECO:0000313|Ensembl:ENSP00000442800}
4ap4C.
 
Q9GKP4 Q9GKP4_SHEEP Interferon stimulated gene 17 {ECO:0000313|EMBL:AAG48523.1}
2bwzA, 2bx1A.
 
Q9SHE7 RUB1_ARATH Ubiquitin-NEDD8-like protein RUB1
1bt0A.
 
P05161 ISG15_HUMAN Ubiquitin-like protein ISG15
1z2mA, 2hj8A, 3phxB, 3pseB, 3r66C, 3rt3B, 3sdlC.
 
O02741 ISG15_BOVIN Ubiquitin-like protein ISG15
2bx0A.
 
O15205 UBD_HUMAN Ubiquitin D
2mbeA.
7.
Q96S82 UBL7_HUMAN Ubiquitin-like protein 7
2cwbA, 2denA.
 
Q9UMX0 UBQL1_HUMAN Ubiquilin-1
2jy5A, 2jy6B, 2klcA.
 
Q99NB8 UBQL4_MOUSE Ubiquilin-4
2knzA.
 
Q9D4I8 Q9D4I8_MOUSE MCG53927 {ECO:0000313|EMBL:EDL16710.1}
1vejA, 1wx8A.
 
Q9UHD9 UBQL2_HUMAN Ubiquilin-2
1j8cA.
 
P48510 DSK2_YEAST Ubiquitin domain-containing protein DSK2
1wr1B, 2bwbA, 2bweA, 2bwfA, 3m63B, 4un2B.
 
Q91W67 UBL7_MOUSE Ubiquitin-like protein 7
1x1mA.
8.
P21899 RL40_TRYBB Ubiquitin-60S ribosomal protein L40
3zf7s.
 
P0DJ25 RL40_TETTS Ubiquitin-60S ribosomal protein L40
4a18K, 4a19K, 4a1bK, 4a1dK, 4adx5.
 
Q8ID50 Q8ID50_PLAF7 60S ribosomal protein L40/UBI, putative {ECO:0000313|EMBL:CAD52778.1}
1vx7f.
 
P0CH08 RL401_YEAST Ubiquitin-60S ribosomal protein L40
1vw8n, 1vwun, 1vxvn, 1vxyn, 3izcp, 3izsp, 3u5em, 3u5im, 4b6am, 4bynm, 4byum, 4ujhZ, 4ujje, 4ujmZ, 4ujoe, 4ujrZ, 4ujte, 4ujwZ, 4ujyd, 4uk1Z, 4uk3e, 4uk6Z, 4uk8e, 4ukbZ, 4ukee, 4ukhZ, 4ukjd, 4ukmZ, 4ukod, 4ukrZ, 4ukte, 4ukwZ, 4ukye, 4ul1Z, 4ul3e, 4ul6Z, 4ul8e, 4ulbZ, 4ulde, 4ulgZ, 4ulie, 4ulmZ, 4uloe, 4ulrZ, 4ultd.
 
P63048 RL40_BOVIN Ubiquitin-60S ribosomal protein L40
4ljoB, 4ljpB.
 
P18101 RL40_DROME Ubiquitin-60S ribosomal protein L40
3j39m.
 
P63053 RL40_PIG Ubiquitin-60S ribosomal protein L40
1vwxm, 1vwzm, 1vx1m, 1vx4m, 4w20m, 4w22m, 4w25m, 4w27m.
 
Q9PT09 Q9PT09_ONCMY Oncorhynchus mykiss genomic scaffold, scaffold_78 {ECO:0000313|EMBL:CDQ60205.1}
3prpB.
 
P62987 RL40_HUMAN Ubiquitin-60S ribosomal protein L40
2lj5A, 2mbhA, 2mjbA, 2murB, 2rsuA, 3j3bm, 4hjkA, 4jioU, 4p4hS, 4pigA, 4pihA, 4pijA, 4rf0B, 4rf1B, 4s1zA.
 
P0CH07 RL402_SCHPO Ubiquitin-60S ribosomal protein L40
4ii2B, 4ii3B.
 
E9Q9J0 E9Q9J0_MOUSE Ubiquitin-60S ribosomal protein L40 {ECO:0000313|Ensembl:ENSMUSP00000122797}
3vhtC.
 
Q10PH1 Q10PH1_ORYSJ Os03g0234200 protein {ECO:0000313|EMBL:BAF11393.1}
3izrp.
9.
F2Z5U0 F2Z5U0_PIG Uncharacterized protein {ECO:0000313|Ensembl:ENSSSCP00000028049}
1vx2f, 1vx5f, 4w23f, 4w28f.
 
P05759 RS27A_YEAST Ubiquitin-40S ribosomal protein S31
1vw9g, 1vwvg, 1vxwf, 1vxzf, 3u5cf, 3u5gf, 4byl5, 4byt5, 4ujfg, 4ujiF, 4ujkg, 4ujnF, 4ujpg, 4ujsF, 4ujug, 4ujxF, 4ujzg, 4uk2F, 4uk4g, 4uk7F, 4uk9g, 4ukcF, 4ukfg, 4ukiF, 4ukkg, 4uknF, 4ukpg, 4uksF, 4ukug, 4ukxF, 4ukzg, 4ul2F, 4ul4g, 4ul7F, 4ul9g, 4ulcF, 4uleg, 4ulhF, 4uljg, 4ulnF, 4ulpg, 4ulsF.
 
P69061 RS27A_KLULA Ubiquitin-40S ribosomal protein S27a
3j80f, 3j81f.
 
P15357 RS27A_DROME Ubiquitin-40S ribosomal protein S27a
3j38f.
 
G1SK22 G1SK22_RABIT Uncharacterized protein {ECO:0000313|Ensembl:ENSOCUP00000003131}
4d5lf, 4kzxf, 4kzyf, 4kzzf.
 
P62979 RS27A_HUMAN Ubiquitin-40S ribosomal protein S27a
2ktfA, 2l0fA, 2l0tA, 2xk5A, 3axcA, 3j3af, 3phwB, 3tblD.
 
P62992 RS27A_BOVIN Ubiquitin-40S ribosomal protein S27a
4m0wB, 4y1hA.
10.
O44739 BAG1_CAEEL BAG family molecular chaperone regulator 1
1t7sA.
 
Q60739 BAG1_MOUSE BAG family molecular chaperone regulator 1
1i6zA, 2lwpA, 2m8sA.
 
Q8RX71 BAG4_ARATH BAG family molecular chaperone regulator 4
4hwhA.
 
Q99933 BAG1_HUMAN BAG family molecular chaperone regulator 1
1hx1B, 1wxvA, 3fzfB, 3fzhB, 3fzkB, 3fzlB, 3fzmB, 3ldqB, 3m3zB.
11.
Q8BGR9 UBCP1_MOUSE Ubiquitin-like domain-containing CTD phosphatase 1 (E.C. 3.1.3.16)
1v5tA.
 
Q8WVY7 UBCP1_HUMAN Ubiquitin-like domain-containing CTD phosphatase 1 (E.C. 3.1.3.16)
2kx3A, 2lgdA.
 
Q9XZ16 Q9XZ16_DROME Ubiquitin-like domain-containing C-terminal domain phosphatase 1 {ECO:0000313|EMBL:AAF56091.1} (E.C. 3.1.3.16 {ECO:0000313|EMBL:AAF56091.1})
3shqA.
12.
G1T8A2 G1T8A2_RABIT Uncharacterized protein {ECO:0000313|Ensembl:ENSOCUP00000012787}
4kzxe, 4kzye, 4kzze.
13.
Q8WTU0 DDI1_HUMAN Protein DDI1 homolog 1
3s8iA.
 
Q9DAF3 DDI1_MOUSE Protein DDI1 homolog 1
1v5oA.
14.
Q8NA54 IQUB_HUMAN IQ and ubiquitin-like domain-containing protein
2dafA.
15.
Q9H347 UBQL3_HUMAN Ubiquilin-3
1wx7A, 1yqbA, 2dahA.
16.
P46379 BAG6_HUMAN Large proline-rich protein BAG6
1wx9A, 4dwfA, 4eewA, 4wwrA, 4x86B.
17.
P0CG47 UBB_HUMAN Polyubiquitin-B
2khwB, 2koxA, 2kwuB, 2kwvB, 2mbbB, 2mroA, 2msgA, 2y5bB, 3nheB, 3nobA, 3oj3A, 3phdE, 3zlzA, 3znhB, 4uelB, 4uf6B, 4wlrC, 4wurB, 4wzpA.
18.
Q7KTX7 Q7KTX7_DROME CG10523-PB, isoform B {ECO:0000313|EMBL:AAN12154.1} (E.C. 6.3.2.19 {ECO:0000313|EMBL:AAN12155.1})
2lwrA, 2m48A.
 
Q9JK66 PRKN2_RAT E3 ubiquitin-protein ligase parkin (E.C. 6.3.2.-)
2knbA, 4k7dA, 4k95A.
 
O60260 PRKN2_HUMAN E3 ubiquitin-protein ligase parkin (E.C. 6.3.2.-)
1iyfA, 2jmoA, 4bm9A, 4i1fA, 4i1hA.
 
Q9WVS6 PRKN2_MOUSE E3 ubiquitin-protein ligase parkin (E.C. 6.3.2.-)
1mg8A, 2zeqA, 3b1lX.
19.
Q15646 OASL_HUMAN 2'-5'-oligoadenylate synthase-like protein
1wh3A, 4xq7A.
20.
P0CG53 UBB_BOVIN Polyubiquitin-B
1e0qA, 2xbbC, 4bbnC.
 
E1B9K1 E1B9K1_BOVIN Polyubiquitin-C {ECO:0000313|Ensembl:ENSBTAP00000053003}
4s22A.
 
Q96C32 Q96C32_HUMAN Polyubiquitin-C {ECO:0000313|Ensembl:ENSP00000443053}
5af4A, 5af5A, 5af6A.
21.
P32628 RAD23_YEAST UV excision repair protein RAD23
1x3wB, 1x3zB, 2qsfX, 2qsgX, 2qshX, 3eswB, 3m62B, 4u29X, 4yirX.
 
P54725 RD23A_HUMAN UV excision repair protein RAD23 homolog A
1dv0A, 1f4iA, 1ifyA, 1oqyA, 1p98A, 1p9dU, 1qzeA, 1tp4A, 1ubaA, 1zo6A, 2wyqA.
 
P54728 RD23B_MOUSE UV excision repair protein RAD23 homolog B
2f4mB, 2f4oB.
 
P54727 RD23B_HUMAN UV excision repair protein RAD23 homolog B
1p1aA, 1pveA, 1uelA.
22.
Q96PU4 UHRF2_HUMAN E3 ubiquitin-protein ligase UHRF2 (E.C. 6.3.2.-)
1wy8A, 1z6uA, 2e6sA, 3olnA, 4pw5A, 4pw6A, 4pw7A.
 
Q8VDF2 UHRF1_MOUSE E3 ubiquitin-protein ligase UHRF1 (E.C. 6.3.2.-)
2zkdA, 2zkeA, 2zkfA, 2zkgA, 2zo0B, 2zo1B, 2zo2B, 3f8iA, 3f8jB, 3fdeA.
 
Q96T88 UHRF1_HUMAN E3 ubiquitin-protein ligase UHRF1 (E.C. 6.3.2.-)
2fazA, 2l3rA, 2lggA, 2lgkA, 2lglA, 2pb7A, 3askA, 3aslA, 3bi7A, 3clzA, 3db3A, 3db4A, 3dwhA, 3fl2A, 3shbA, 3souA, 3sowA, 3soxA, 3t6rA, 3zvyA, 3zvzB, 4gy5A, 4qqdA.
23.
P0C895 Y2010_ARATH LRR repeats and ubiquitin-like domain-containing protein At2g30105
2kd0A.
24.
Q8K4Z5 SF3A1_MOUSE Splicing factor 3A subunit 1
1we7A.
 
Q8RXF1 SF3A1_ARATH Probable splicing factor 3A subunit 1
1we6A.
 
Q15459 SF3A1_HUMAN Splicing factor 3A subunit 1
1zkhA, 2dt6A, 2dt7B.
25.
Q9NZJ4 SACS_HUMAN Sacsin
1iurA, 3o10A.
26.
P0CG63 UBI4P_YEAST Polyubiquitin
1otrB, 1q0wB, 1wr1A, 1zw7A, 2g3qB, 2jt4B, 2jwzA, 2kdiA, 2l00B, 3cmmB, 3l0wB, 3l10B, 3olmD, 4hcnB, 4nnjB, 4q5eB, 4q5hB.
27.
P0CH28 UBC_BOVIN Polyubiquitin-C
1aarA, 1p3qU, 1uzxB, 1v80A, 1v81A, 1wr6E, 1wrdB, 1yd8U, 2c7mB, 2c7nB, 2d3gA, 2dx5B, 2fidA, 2fifA, 2hd5B, 2oobB, 2qhoA, 2wwzA, 2wx0A, 2wx1A, 2zccA, 3h1uA, 3m3jA, 4xyzA.
 
P0CG50 UBC_MOUSE Polyubiquitin-C
2znvB, 3a1qA, 3a9jA, 3a9kA, 3wxgB, 4nqlB.
 
P0CG48 UBC_HUMAN Polyubiquitin-C
1c3tA, 1cmxB, 1d3zA, 1f9jA, 1fxtB, 1g6jA, 1gjzA, 1nbfC, 1ogwA, 1q5wB, 1s1qB, 1sifA, 1tbeA, 1ubiA, 1ubqA, 1ud7A, 1xd3B, 1xqqA, 1yx5B, 1yx6B, 1zguB, 2ayoB, 2bgfA, 2denB, 2fuhB, 2g45B, 2gbjA, 2gbkA, 2gbmA, 2gbnA, 2gbrA, 2gmiC, 2hthA, 2ibiB, 2j7qB, 2jf5A, 2jriB, 2jy6A, 2jzzA, 2k25A, 2k6dB, 2k8bA, 2k8cA, 2kdfB, 2kjhB, 2klgA, 2kn5A, 2kx0A, 2l3zA, 2ld9A, 2lvoA, 2lvpA, 2lvqA, 2mboA, 2mbqA, 2mcnB, 2mi8A, 2mj5A, 2morA, 2mreA, 2mwsA, 2nr2A, 2o6vA, 2ojrA, 2pe9A, 2peaA, 2rr9A, 2ru6A, 2w9nA, 2wdtB, 2xewA, 2z59B, 2zcbA, 2zvnA, 2zvoA, 3a33B, 3albA, 3aulA, 3b08A, 3b0aA, 3by4B, 3c0rB, 3dvgX, 3dvnX, 3eecA, 3efuA, 3ehvA, 3h7pA, 3h7sA, 3hm3A, 3ifwB, 3ihpC, 3jsvA, 3jvzX, 3jw0X, 3k9oB, 3k9pB, 3kvfB, 3kw5B, 3ldzF, 3mhsD, 3mtnB, 3n30A, 3n32A, 3n3kB, 3ns8A, 3o65B, 3oj4B, 3onsA, 3prmB, 3pt2B, 3ptfC, 3q3fA, 3rulA, 3tmpB, 3u30A, 3ugbB, 3v6cB, 3v6eB, 3vfkA, 3vuwA, 3vuxA, 3vuyA, 3wxeB, 3wxfB, 3zniD, 3znzB, 4auqC, 4bosC, 4bozB, 4bvuC, 4ddgD, 4dhjB, 4dhzB, 4fjvB, 4hk2A, 4hxdA, 4i6lB, 4i6nB, 4ig7B, 4iumB, 4jqwC, 4k1rB, 4k7sA, 4k7uA, 4k7wA, 4kskC, 4kslD, 4lcdE, 4ldtB, 4mdkE, 4mm3A, 4msmB, 4msqB, 4nqkE, 4oxaU, 4un2A, 4v3kB, 4v3lB.

List of Pfam domains

  Pfam code Pfam id Description
PF00240 ubiquitin Ubiquitin family
PF00560 LRR_1 Leucine Rich Repeat
PF00627 UBA UBA/TS-N domain
PF00628 PHD PHD-finger
PF01020 Ribosomal_L40e Ribosomal L40e family
PF01485 IBR IBR domain
PF01599 Ribosomal_S27 Ribosomal protein S27a
PF01805 Surp Surp module
PF02179 BAG BAG domain
PF02182 SAD_SRA SAD/SRA domain
PF03031 NIF NLI interacting factor-like phosphatase
PF04758 Ribosomal_S30 Ribosomal protein S30
PF05168 HEPN HEPN domain
PF09280 XPC-binding XPC-binding domain
PF09668 Asp_protease Aspartyl protease
PF10421 OAS1_C 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus
PF12057 DUF3538 Domain of unknown function (DUF3538)
PF12148 DUF3590 Protein of unknown function (DUF3590)
PF12230 PRP21_like_P Pre-mRNA splicing factor PRP21 like protein
PF12799 LRR_4 Leucine Rich repeats (2 copies)
PF13855 LRR_8 Leucine rich repeat
PB001613
PB002612
PB006830
PB008197
PB009388
PB014625
PB016426
PB019515
PB019582
PB021321
PB022030
PB024475
PB034309
PB039792

 

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