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Pfam domain PF00240

Pfam domain PF00240

Pfam domain:   
  PF00240 - Ubiquitin family  

Below is the list of protein structures in the PDB containing Pfam domain PF00240.

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Structures in the PDB containing this domain: 526

  Pfam domain
architecture
UniProt
accession
UniProt id Protein name PDB structures
1.
P11441 UBL4A_HUMAN Ubiquitin-like protein 4A
2dziA.
 
Q15370 ELOB_HUMAN Transcription elongation factor B polypeptide 2
1lm8B, 1lqbA, 1vcbA, 2c9wB, 2izvB, 2jz3B, 2ma9B, 2xaiC, 3dcgA, 3zkjC, 3zngC, 3zrcA, 3zrfA, 3ztcA, 3ztdA, 3zunA, 4ajyB, 4awjA, 4b95A, 4b9kA, 4bksA, 4bktA, 4n9fX, 4w9cA, 4w9dA, 4w9eA, 4w9fA, 4w9gA, 4w9hA, 4w9iA, 4w9jA, 4w9kA, 4w9lA.
 
Q9M0W8 Q9M0W8_ARATH Putative uncharacterized protein AT4g05270
2kk8A.
 
Q3V209 TMUB2_MOUSE Transmembrane and ubiquitin-like domain-containing protein 2
1wiaA.
 
C4M760 C4M760_ENTHI Ubiquitin
4gswA, 4gu2A.
 
Q9BZL1 UBL5_HUMAN Ubiquitin-like protein 5
1p0rA, 4pyuA.
 
Q584D3 Q584D3_TRYB2 Ubiquitin, putative
2lrwA.
 
Q15843 NEDD8_HUMAN NEDD8
1nddA, 1r4mI, 1r4nI, 1xt9B, 2bkrB, 2ko3A, 2nvuI, 3dbhI, 3dblI, 3dbrI, 3dqvA, 3gznI, 4f8cB, 4fbjB, 4hcpB, 4p5oK.
 
Q12285 MDY2_YEAST Ubiquitin-like protein MDY2
2lnzA, 2lxaA, 2lxcA, 2wpvB, 3lkuB, 3vejA, 3zdmC, 4a20A, 4aswC, 4gocA, 4pwxF.
 
Q12306 SMT3_YEAST Ubiquitin-like protein SMT3
1euvB, 1l2nA, 2ekeC, 3pgeA, 3qhtA, 3tixA, 3v60A, 3v61A, 3v62A, 3vawA.
 
P62869 ELOB_MOUSE Transcription elongation factor B polypeptide 2
2fnjB, 4jghB.
 
Q9PST8 Q9PST8_CHICK Polyubiquitin
1yiwA, 2fcqA.
 
Q78JW9 UBFD1_MOUSE Ubiquitin domain-containing protein UBFD1
1v86A.
 
P35544 UBIM_HUMAN Ubiquitin-like protein FUBI
2l7rA.
 
Q9BSE4 HERP2_HUMAN Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein
2kdbA.
 
Q6Q546 HUB1_YEAST Ubiquitin-like modifier HUB1
1m94A, 3pluA, 3plvA.
 
Q9EPV8 UBL5_MOUSE Ubiquitin-like protein 5
1uh6A.
 
P62975 UBIQ_RABIT Ubiquitin
4cxdm, 4upxm, 4uq1m.
2.
Q8WUN7 UBTD2_HUMAN Ubiquitin domain-containing protein 2
1ttnA, 2ksnA.
3.
Q14DL0 UBQLN_MOUSE Ubiquilin-like protein
2dnaA.
4.
Q9ZV63 Q9ZV63_ARATH Putative uncharacterized protein At2g32350
2kanA.
5.
Q15011 HERP1_HUMAN Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein
1wgdA.
6.
P05161 ISG15_HUMAN Ubiquitin-like protein ISG15
1z2mA, 2hj8A, 3phxB, 3pseB, 3r66C, 3rt3B, 3sdlC.
 
F5H747 F5H747_HUMAN Polyubiquitin-C
4ap4C.
 
O15205 UBD_HUMAN Ubiquitin D
2mbeA.
 
P62972 UBIQP_XENLA Polyubiquitin
2k39A, 2kdeB.
 
Q9SHE7 RUB1_ARATH Ubiquitin-NEDD8-like protein RUB1
1bt0A.
 
O02741 ISG15_BOVIN Ubiquitin-like protein ISG15
2bx0A.
 
Q9GKP4 Q9GKP4_SHEEP Interferon stimulated gene 17
2bwzA, 2bx1A.
7.
Q9UHD9 UBQL2_HUMAN Ubiquilin-2
1j8cA.
 
Q91W67 UBL7_MOUSE Ubiquitin-like protein 7
1x1mA.
 
P48510 DSK2_YEAST Ubiquitin domain-containing protein DSK2
1wr1B, 2bwbA, 2bweA, 2bwfA, 3m63B, 4un2B.
 
Q9UMX0 UBQL1_HUMAN Ubiquilin-1
2jy5A, 2jy6B, 2klcA.
 
Q99NB8 UBQL4_MOUSE Ubiquilin-4
2knzA.
 
Q96S82 UBL7_HUMAN Ubiquitin-like protein 7
2cwbA, 2denA.
 
Q9D4I8 Q9D4I8_MOUSE MCG53927
1vejA, 1wx8A.
8.
P18101 RL40_DROME Ubiquitin-60S ribosomal protein L40
3j39m.
 
P0CH07 RL402_SCHPO Ubiquitin-60S ribosomal protein L40
4ii2B, 4ii3B.
 
P0CH08 RL401_YEAST Ubiquitin-60S ribosomal protein L40
1vw8n, 1vwun, 1vxvn, 1vxyn, 3izcp, 3izsp, 3u5em, 3u5im, 4b6am, 4bynm, 4byum.
 
Q10PH1 Q10PH1_ORYSJ Os03g0234200 protein
3iz5p, 3izrp.
 
P63048 RL40_BOVIN Ubiquitin-60S ribosomal protein L40
4ljoB, 4ljpB.
 
P0CH09 RL402_YEAST Ubiquitin-60S ribosomal protein L40
4cuwm.
 
P0DJ25 RL40_TETTS Ubiquitin-60S ribosomal protein L40
4a18K, 4a19K, 4a1bK, 4a1dK, 4adx5.
 
P0CH34 RL40A_ORYSJ Ubiquitin-60S ribosomal protein L40-1
3j61m.
 
E9Q9J0 E9Q9J0_MOUSE Ubiquitin-60S ribosomal protein L40
3vhtC.
 
P21899 RL40_TRYBB Ubiquitin-60S ribosomal protein L40
3zf7s.
 
Q8ID50 Q8ID50_PLAF7 60S ribosomal protein L40/UBI, putative
1vx7f.
 
P62987 RL40_HUMAN Ubiquitin-60S ribosomal protein L40
2lj5A, 2mbhA, 2mjbA, 2rsuA, 3j3bm, 4jioU, 4p4hS.
 
Q9PT09 Q9PT09_ONCMY Oncorhynchus mykiss genomic scaffold, scaffold_78
3prpB.
 
P63053 RL40_PIG Ubiquitin-60S ribosomal protein L40
1vwxm, 1vwzm, 1vx1m, 1vx4m, 4w20m, 4w22m, 4w25m, 4w27m.
9.
F2Z5U0 F2Z5U0_PIG Uncharacterized protein
1vx2f, 1vx5f, 4w23f, 4w28f.
 
P15357 RS27A_DROME Ubiquitin-40S ribosomal protein S27a
3j38f.
 
P05759 RS27A_YEAST Ubiquitin-40S ribosomal protein S31
1vw9g, 1vwvg, 1vxwf, 1vxzf, 3u5cf, 3u5gf, 4byl5, 4byt5, 4cuyf.
 
P62992 RS27A_BOVIN Ubiquitin-40S ribosomal protein S27a
4m0wB.
 
P62979 RS27A_HUMAN Ubiquitin-40S ribosomal protein S27a
2ktfA, 2l0fA, 2l0tA, 2xk5A, 3axcA, 3j3af, 3phwB, 3tblD.
 
G1SK22 G1SK22_RABIT Uncharacterized protein
4kzxf, 4kzyf, 4kzzf.
 
P51431 R27AB_ORYSJ Ubiquitin-40S ribosomal protein S27a-2
3j60f.
10.
Q99933 BAG1_HUMAN BAG family molecular chaperone regulator 1
1hx1B, 1wxvA, 3fzfB, 3fzhB, 3fzkB, 3fzlB, 3fzmB, 3ldqB, 3m3zB.
 
Q60739 BAG1_MOUSE BAG family molecular chaperone regulator 1
1i6zA, 2lwpA, 2m8sA.
 
O44739 BAG1_CAEEL BAG family molecular chaperone regulator 1
1t7sA.
 
Q8RX71 BAG4_ARATH BAG family molecular chaperone regulator 4
4hwhA.
11.
Q9XZ16 Q9XZ16_DROME CG6697 (E.C. 3.1.3.16)
3shqA.
 
Q8BGR9 UBCP1_MOUSE Ubiquitin-like domain-containing CTD phosphatase 1 (E.C. 3.1.3.16)
1v5tA.
 
Q8WVY7 UBCP1_HUMAN Ubiquitin-like domain-containing CTD phosphatase 1 (E.C. 3.1.3.16)
2kx3A, 2lgdA.
12.
G1T8A2 G1T8A2_RABIT Uncharacterized protein
4kzxe, 4kzye, 4kzze.
13.
Q8WTU0 DDI1_HUMAN Protein DDI1 homolog 1
3s8iA.
 
Q9DAF3 DDI1_MOUSE Protein DDI1 homolog 1
1v5oA.
14.
Q8NA54 IQUB_HUMAN IQ and ubiquitin-like domain-containing protein
2dafA.
15.
Q9H347 UBQL3_HUMAN Ubiquilin-3
1wx7A, 1yqbA, 2dahA.
16.
P46379 BAG6_HUMAN Large proline-rich protein BAG6
1wx9A, 4dwfA, 4eewA.
17.
Q9UFQ0 Q9UFQ0_HUMAN Putative uncharacterized protein DKFZp434K0435
4hjkA.
 
P0CG47 UBB_HUMAN Polyubiquitin-B
2khwB, 2koxA, 2kwuB, 2kwvB, 2mbbB, 2y5bB, 3nheB, 3nobA, 3oj3A, 3onsA, 3phdE, 3zlzA, 3znhB, 3znzB.
18.
O60260 PRKN2_HUMAN E3 ubiquitin-protein ligase parkin (E.C. 6.3.2.-)
1iyfA, 2jmoA, 4bm9A, 4i1fA, 4i1hA.
 
Q9JK66 PRKN2_RAT E3 ubiquitin-protein ligase parkin (E.C. 6.3.2.-)
2knbA, 4k7dA, 4k95A.
 
Q7KTX7 Q7KTX7_DROME FI05213p (E.C. 6.3.2.19, 6.3.2.19)
2lwrA, 2m48A.
 
Q9WVS6 PRKN2_MOUSE E3 ubiquitin-protein ligase parkin (E.C. 6.3.2.-)
1mg8A, 2zeqA, 3b1lX.
19.
Q15646 OASL_HUMAN 2'-5'-oligoadenylate synthase-like protein
1wh3A.
20.
P0CG53 UBB_BOVIN Polyubiquitin-B
1e0qA, 2xbbC, 4bbnC.
21.
P32628 RAD23_YEAST UV excision repair protein RAD23
1x3wB, 1x3zB, 2qsfX, 2qsgX, 2qshX, 3eswB, 3m62B.
 
P54728 RD23B_MOUSE UV excision repair protein RAD23 homolog B
2f4mB, 2f4oB.
 
P54727 RD23B_HUMAN UV excision repair protein RAD23 homolog B
1p1aA, 1pveA, 1uelA.
 
P54725 RD23A_HUMAN UV excision repair protein RAD23 homolog A
1dv0A, 1f4iA, 1ifyA, 1oqyA, 1p98A, 1p9dU, 1qzeA, 1tp4A, 1ubaA, 1zo6A, 2wyqA.
22.
Q8VDF2 UHRF1_MOUSE E3 ubiquitin-protein ligase UHRF1 (E.C. 6.3.2.-)
2zkdA, 2zkeA, 2zkfA, 2zkgA, 2zo0B, 2zo1B, 2zo2B, 3f8iA, 3f8jB, 3fdeA.
 
Q96T88 UHRF1_HUMAN E3 ubiquitin-protein ligase UHRF1 (E.C. 6.3.2.-)
2fazA, 2l3rA, 2lggA, 2lgkA, 2lglA, 2pb7A, 3askA, 3aslA, 3bi7A, 3clzA, 3db3A, 3db4A, 3dwhA, 3fl2A, 3shbA, 3souA, 3sowA, 3soxA, 3t6rA, 3zvyA, 3zvzB, 4gy5A, 4qqdA.
 
Q96PU4 UHRF2_HUMAN E3 ubiquitin-protein ligase UHRF2 (E.C. 6.3.2.-)
1wy8A, 1z6uA, 2e6sA, 3olnA, 4pw5A, 4pw6A, 4pw7A.
23.
P0C895 Y2010_ARATH LRR repeats and ubiquitin-like domain-containing protein At2g30105
2kd0A.
24.
Q8K4Z5 SF3A1_MOUSE Splicing factor 3A subunit 1
1we7A.
 
Q8RXF1 SF3A1_ARATH Probable splicing factor 3A subunit 1
1we6A.
 
Q15459 SF3A1_HUMAN Splicing factor 3A subunit 1
1zkhA, 2dt6A, 2dt7B.
25.
Q9NZJ4 SACS_HUMAN Sacsin
1iurA, 3o10A.
26.
P0CG63 UBI4P_YEAST Polyubiquitin
1otrB, 1q0wB, 1wr1A, 1zw7A, 2g3qB, 2jt4B, 2jwzA, 2kdiA, 2l00B, 3cmmB, 3l0wB, 3l10B, 3olmD, 4hcnB, 4nnjB, 4q5eB, 4q5hB.
27.
P0CH28 UBC_BOVIN Polyubiquitin-C
1aarA, 1p3qU, 1uzxB, 1v80A, 1v81A, 1wr6E, 1wrdB, 1yd8U, 2c7mB, 2c7nB, 2d3gA, 2dx5B, 2fidA, 2fifA, 2hd5B, 2oobB, 2qhoA, 2wwzA, 2wx0A, 2wx1A, 2zccA, 3h1uA, 3m3jA.
 
P0CG48 UBC_HUMAN Polyubiquitin-C
1c3tA, 1cmxB, 1d3zA, 1f9jA, 1fxtB, 1g6jA, 1gjzA, 1nbfC, 1ogwA, 1q5wB, 1s1qB, 1sifA, 1tbeA, 1ubiA, 1ubqA, 1ud7A, 1xd3B, 1xqqA, 1yx5B, 1yx6B, 1zguB, 2ayoB, 2bgfA, 2denB, 2fuhB, 2g45B, 2gbjA, 2gbkA, 2gbmA, 2gbnA, 2gbrA, 2gmiC, 2hthA, 2ibiB, 2j7qB, 2jf5A, 2jriB, 2jy6A, 2jzzA, 2k25A, 2k6dB, 2k8bA, 2k8cA, 2kdfB, 2kjhB, 2klgA, 2kn5A, 2kx0A, 2l3zA, 2ld9A, 2lvoA, 2lvpA, 2lvqA, 2mboA, 2mbqA, 2mcnB, 2mi8A, 2mj5A, 2morA, 2nr2A, 2o6vA, 2ojrA, 2pe9A, 2peaA, 2rr9A, 2ru6A, 2w9nA, 2wdtB, 2xewA, 2z59B, 2zcbA, 2zvnA, 2zvoA, 3a33B, 3albA, 3aulA, 3b08A, 3b0aA, 3by4B, 3c0rB, 3dvgX, 3dvnX, 3eecA, 3efuA, 3ehvA, 3h7pA, 3h7sA, 3hm3A, 3ifwB, 3ihpC, 3jsvA, 3jvzX, 3jw0X, 3k9oB, 3k9pB, 3kvfB, 3kw5B, 3ldzF, 3mhsD, 3mtnB, 3n30A, 3n32A, 3n3kB, 3ns8A, 3o65B, 3oj4B, 3prmB, 3pt2B, 3ptfC, 3q3fA, 3rulA, 3tmpB, 3u30A, 3ugbB, 3v6cB, 3v6eB, 3vfkA, 3vuwA, 3vuxA, 3vuyA, 3zniD, 4auqC, 4bosC, 4bozB, 4bvuC, 4ddgD, 4dhjB, 4dhzB, 4fjvB, 4hk2A, 4hxdA, 4i6lB, 4i6nB, 4ig7B, 4iumB, 4jqwC, 4k1rB, 4k7sA, 4k7uA, 4k7wA, 4kskC, 4kslD, 4lcdE, 4ldtB, 4mdkE, 4mm3A, 4msmB, 4msqB, 4nqkE, 4un2A.
 
P0CG50 UBC_MOUSE Polyubiquitin-C
2znvB, 3a1qA, 3a9jA, 3a9kA.

List of Pfam domains

  Pfam code Pfam id Description
PF00240 ubiquitin Ubiquitin family
PF00560 LRR_1 Leucine Rich Repeat
PF00627 UBA UBA/TS-N domain
PF00628 PHD PHD-finger
PF01020 Ribosomal_L40e Ribosomal L40e family
PF01485 IBR IBR domain
PF01599 Ribosomal_S27 Ribosomal protein S27a
PF01805 Surp Surp module
PF02179 BAG BAG domain
PF02182 SAD_SRA SAD/SRA domain
PF03031 NIF NLI interacting factor-like phosphatase
PF04758 Ribosomal_S30 Ribosomal protein S30
PF05168 HEPN HEPN domain
PF09280 XPC-binding XPC-binding domain
PF09668 Asp_protease Aspartyl protease
PF10421 OAS1_C 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus
PF12057 DUF3538 Domain of unknown function (DUF3538)
PF12148 DUF3590 Protein of unknown function (DUF3590)
PF12230 PRP21_like_P Pre-mRNA splicing factor PRP21 like protein
PF12799 LRR_4 Leucine Rich repeats (2 copies)
PF13855 LRR_8 Leucine rich repeat
PB001613
PB002612
PB006830
PB008197
PB009388
PB014625
PB016426
PB019515
PB019582
PB021321
PB022030
PB024475
PB034309
PB039792

 

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