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Pfam domain PF00136

Pfam domain PF00136

Pfam domain:   
  PF00136 - DNA polymerase family B  

Below is the list of protein structures in the PDB containing Pfam domain PF00136.

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Structures in the PDB containing this domain: 185

  Pfam domain
architecture
UniProt
accession
UniProt id Protein name PDB structures
1.
O60673 DPOLZ_HUMAN DNA polymerase zeta catalytic subunit (E.C. 2.7.7.7)
3abdX, 3abeZ, 3vu7Z, 4extB, 4gk0C, 4gk5C.
2.
Q61493 DPOLZ_MOUSE DNA polymerase zeta catalytic subunit (E.C. 2.7.7.7)
4fjoD.
3.
P15436 DPOD_YEAST DNA polymerase delta catalytic subunit (E.C. 2.7.7.7)
3iayA.
4.
P03198 DPOL_EBVB9 DNA polymerase catalytic subunit (E.C. 2.7.7.7)
1h15C.
 
P04415 DPOL_BPT4 DNA polymerase (E.C. 2.7.7.7)
1noyA, 1nozA.
 
P08546 DPOL_HCMVA DNA polymerase catalytic subunit (E.C. 2.7.7.7)
1yypB.
 
P26811 DPOL1_SULSO DNA polymerase 1 (E.C. 2.7.7.7)
1s5jA.
5.
Q38087 DPOL_BPR69 DNA polymerase (E.C. 2.7.7.7)
1b1fR, 1b8hD, 1clqA, 1ig9A, 1ih7A, 1q9xA, 1q9yA, 1rv2A, 1wafA, 1wajA, 2atqA, 2dtuA, 2dy4A, 2oyqA, 2ozmA, 2ozsA, 2p5gA, 2p5oA, 3cfoA, 3cfpA, 3cfrA, 3cq8A, 3kd1E, 3kd5E, 3l8bA, 3ldsA, 3lziA, 3lzjA, 3naeA, 3nciA, 3ndkA, 3ne6A, 3ngiA, 3nhgA, 3qeiA, 3qepA, 3qerA, 3qesA, 3qetA, 3qevA, 3qewA, 3qexA, 3qnnA, 3qnoA, 3rmaA, 3rmbA, 3rmcA, 3rmdA, 3rwuA, 3s9hA, 3scxA, 3si6A, 3sjjA, 3snnA, 3spyA, 3spzA, 3sq0A, 3sq1A, 3sq2A, 3sq4A, 3sunA, 3suoA, 3supA, 3suqA, 3tabA, 3taeA, 3tafA, 3tagA, 3uiqA, 4dtjA, 4dtmA, 4dtnA, 4dtoA, 4dtpA, 4dtrA, 4dtsA, 4dtuA, 4dtxA, 4du1A, 4du3A, 4du4A, 4e3sA, 4fj5A, 4fj7A, 4fj8A, 4fj9A, 4fjgA, 4fjhA, 4fjiA, 4fjjA, 4fjkA, 4fjlA, 4fjmA, 4fjnA, 4fjxA, 4fk0A, 4fk2A, 4fk4A, 4i9lA, 4i9qA, 4j2aA, 4j2bA, 4j2dA, 4j2eA, 4khnA, 4khqA, 4khsA, 4khuA, 4khwA, 4khyA, 4ki4A, 4ki6A, 4m3rA, 4m3tA, 4m3uA, 4m3wA, 4m3xA, 4m3yA, 4m3zA, 4m41A, 4m42A, 4m45A.
 
P21189 DPO2_ECOLI DNA polymerase II (E.C. 2.7.7.7)
1q8iA, 3k57A, 3k58A, 3k59A, 3k5aA, 3k5lA, 3k5mA, 3k5nA, 3k5oA, 3maqA.
6.
D0VWU9 D0VWU9_THEKO rchaeota (E.C. 2.7.7.7)
1wn7A, 4k8zA.
 
P0CL76 DPOL_PYRAY DNA polymerase 1 (E.C. 2.7.7.7)
4fluA.
 
Q7SIG7 DPOL_DESST DNA polymerase (E.C. 2.7.7.7)
1d5aA, 1qqcA.
 
P56689 DPOL_THEGO DNA polymerase (E.C. 2.7.7.7)
1tgoA, 2vwjA, 2vwkA, 2xhbA.
 
P61875 DPOL_PYRFU DNA polymerase (E.C. 2.7.7.7)
2jguA, 3a2fA, 4ahcA, 4ailC.
 
Q56366 DPOL_THES9 DNA polymerase (E.C. 2.7.7.7)
1qhtA, 4k8xA.
 
P0CL77 DPOL_PYRAB DNA polymerase 1 (E.C. 2.7.7.7)
4fltA, 4flvA, 4flwA, 4flxA, 4flyA, 4flzA, 4fm0A, 4fm1A, 4fm2A.
7.
P07917 DPOL_HHV1A DNA polymerase catalytic subunit (E.C. 2.7.7.7, 3.1.26.4)
1dmlB.
 
P04292 DPOL_HHV1K DNA polymerase catalytic subunit (E.C. 2.7.7.7, 3.1.26.4)
2gv9A.
8.
P09884 DPOLA_HUMAN DNA polymerase alpha catalytic subunit (E.C. 2.7.7.7)
1k0pA, 1k18A, 1n5gA.
 
P13382 DPOA_YEAST DNA polymerase alpha catalytic subunit A (E.C. 2.7.7.7)
3floB, 3oiqB, 4b08A, 4fvmA, 4fxdA, 4fydA.
9.
P21951 DPOE_YEAST DNA polymerase epsilon catalytic subunit A (E.C. 2.7.7.7)
4m8oA, 4ptfA.
10.
P77933 DPOL_THEKO DNA polymerase (E.C. 2.7.7.7, 3.1.-.-, 3.1.-.-)
1wnsA, 2cw7A, 2cw8A.

List of Pfam domains

  Pfam code Pfam id Description
PF00136 DNA_pol_B DNA polymerase family B
PF03104 DNA_pol_B_exo1 DNA polymerase family B, exonuclease domain
PF08490 DUF1744 Domain of unknown function (DUF1744)
PF08996 zf-DNA_Pol DNA Polymerase alpha zinc finger
PF11590 DNAPolymera_Pol DNA polymerase catalytic subunit Pol
PF12254 DNA_pol_alpha_N DNA polymerase alpha subunit p180 N terminal
PF14260 zf-C4pol C4-type zinc-finger of DNA polymerase delta
PF14528 LAGLIDADG_3 LAGLIDADG-like domain
PF14890 Intein_splicing Intein splicing domain
PB004659
PB015276
PB017041
PB017682
PB020084
PB022053
PB022928
PB023271
PB023473
PB027007
PB032660
PB034836
PB038354
PB060868

 

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