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Pfam domain PF00078

Pfam domain PF00078

Pfam domain:   
  PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase)  

Below is the list of protein structures in the PDB containing Pfam domain PF00078.

+/- Key to table

Structures in the PDB containing this domain: 1185

  Pfam domain
architecture
UniProt
accession
UniProt id Protein name PDB structures
1.
O14746 TERT_HUMAN Telomerase reverse transcriptase (E.C. 2.7.7.49)
4b18B.
2.
Q4KTA7 Q4KTA7_TAKRU Telomerase reverse transcriptase {ECO:0000313|EMBL:AAX59693.1}
4lmoA.
3.
Q0QHL8 Q0QHL8_TRICA Telomerase reverse transcriptase {ECO:0000313|EMBL:ABD17350.1}
3du5A, 3du6A, 3kylA.
4.
Q1PS67 Q1PS67_ORYLA Telomerase reverse transcriptase {ECO:0000313|EMBL:ABB76648.1}
4o26A.
5.
Q9WFL7 Q9WFL7_9HIV1 Pol polyprotein {ECO:0000313|EMBL:AAD27993.1}
2qmpA, 3m9fA, 4ll3A.
 
Q8UM83 Q8UM83_9HIV1 Pol protein {ECO:0000313|EMBL:AAL34549.1}
2i5jB.
 
Q4VE97 Q4VE97_9HIV1 Pol protein {ECO:0000313|EMBL:AAY30113.1}
1hvcA.
 
Q6BB74 Q6BB74_9HIV1 Pol protein {ECO:0000313|EMBL:AAT92432.1}
2p3aA.
6.
Q7M4J4 Q7M4J4_BOMMO RNA-directed DNA polymerase homolog (R1) {ECO:0000313|PIR:B27672} (E.C. 2.7.7.49 {ECO:0000313|PIR:B27672})
2ei9A.
7.
O77448 TERT_TETTH Telomerase reverse transcriptase (E.C. 2.7.7.49)
2b2aA, 2r4gA.
8.
Q000H7 Q000H7_9HIV1 Pol protein {ECO:0000313|EMBL:ABJ52797.1}
3r0wA, 3r0yA, 3so9A, 3spkA, 4eyrA, 4faeA, 4fafA, 4l1aA, 4nkkA.
 
Q90JJ9 Q90JJ9_9HIV1 Pol polyprotein {ECO:0000313|EMBL:AAK35782.1}
4m8xA, 4m8yA.
 
Q90SN9 Q90SN9_9HIV1 Pol protein {ECO:0000313|EMBL:AAK50724.1}
2o4nA.
 
Q90HG9 Q90HG9_9HIV1 Pol polyprotein {ECO:0000313|EMBL:AAK36512.1}
2fxdA.
 
Q994Q3 Q994Q3_9HIV1 Truncated pol polyprotein {ECO:0000313|EMBL:AAK30973.1}
3u71A.
 
Q7SMT3 Q7SMT3_9HIV1 Pol polyprotein {ECO:0000313|EMBL:CAE17412.1}
2b60A.
 
Q90K99 Q90K99_9HIV1 Pol polyprotein {ECO:0000313|EMBL:AAK35532.1}
3o99A, 3o9aA, 3o9bA, 3o9cA, 3o9dA, 3o9eA, 4djoA, 4djpA, 4djqA, 4djrA.
9.
Q93139 Q93139_BOMMO ORF2 {ECO:0000313|EMBL:BAA07467.1}
1wduA.
10.
Q8TE30 Q8TE30_HUMAN Putative uncharacterized protein {ECO:0000313|EMBL:AAL50637.1}
1vybA, 2v0rA, 2v0sA.
11.
A0F6C5 A0F6C5_9HIV1 Pol protein {ECO:0000313|EMBL:ABJ93953.1}
2rkgA.
 
A0F7J4 A0F7J4_9HIV1 Pol protein {ECO:0000313|EMBL:ABJ94460.1}
2rkfA.
12.
Q72547 Q72547_9HIV1 Reverse transcriptase/RNaseH {ECO:0000313|EMBL:AAA93161.1}
2jleA, 3hyfA, 3qinA, 3qioA.
13.
P14350 POL_FOAMV Pro-Pol polyprotein (E.C. 2.7.7.49, 2.7.7.7, 3.1.26.4, 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.4.23.-, 3.1.26.4)
2lsnA, 2x6nA, 2x6sA, 2x74A, 2x78A, 3dlrA, 3l2qA, 3l2rA, 3l2sA, 3l2tA, 3l2uA, 3l2vA, 3l2wA, 3os0A, 3os1A, 3os2A, 3oy9A, 3oyaA, 3oybA, 3oycA, 3oydA, 3oyeA, 3oyfA, 3oygA, 3oyhA, 3oyiA, 3oyjA, 3oykA, 3oylA, 3oymA, 3oynA, 3s3mA, 3s3nA, 3s3oA, 4bacA, 4bdyA, 4bdzA, 4be0A, 4be1A, 4be2A, 4e7hA, 4e7iA, 4e7jA, 4e7kA, 4e7lA, 4ikfA.
14.
Q99315 YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4)
4ol8A.
15.
P23074 POL_SFV1 Pro-Pol polyprotein (E.C. 2.7.7.49, 2.7.7.7, 3.1.26.4, 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.4.23.-, 3.1.26.4)
2jysA.
16.
Q9E7M1 Q9E7M1_9GAMR Putative gag-pro-pol polyprotein {ECO:0000313|EMBL:AAG29093.1}
3slzA, 3sm1A, 3sm2A, 4exhA.
 
P03355 POL_MLVMS Gag-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4)
1d0eA, 1d1uA, 1i6jA, 1mmlA, 1n4lA, 1nndA, 1qaiA, 1qajA, 1rw3A, 1zttA, 1ztwA, 2fjvA, 2fjwA, 2fjxA, 2fvpA, 2fvqA, 2fvrA, 2fvsA, 2hb5A, 2m9uA, 2mqvA, 2ms0A, 2ms1A, 2r2rA, 2r2sA, 2r2tA, 2r2uA, 3fsiA, 3nnqA, 4m94A, 4m95A, 4mh8A, 4nzgA.
 
A1Z651 POL_XMRV6 Gag-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4)
3nr6A, 3p1gA, 4e89A, 4hkqA.
 
Q2F7J3 POL_XMRV3 Gag-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4)
3v1oA, 3v1qA, 3v1rA.
17.
A7YKL0 A7YKL0_9HIV1 Pol protein {ECO:0000313|EMBL:ABM63566.1}
3dm2A, 3dmjA, 3dokA, 3dolA.
 
Q673V0 Q673V0_9HIV1 Pol protein {ECO:0000313|EMBL:AAT08769.1}
3mwsA.
 
Q74596 Q74596_9HIV1 Pol {ECO:0000313|EMBL:BAA12989.1}
3dm2B, 3dmjB.
 
Q88016 Q88016_SIVM3 Pol polyprotein {ECO:0000313|EMBL:AAA47633.2}
1sipA.
 
Q72498 Q72498_9HIV1 POL polyprotein {ECO:0000313|EMBL:AAB60572.1}
3ao1A, 3ao3A, 3ao4A, 3ao5A, 3l3uA, 3l3vA, 3ovnA, 3vq4A, 3vq5A, 3vq6A, 3vq7A, 3vq8A, 3vq9A, 3vqaA, 3vqbA, 3vqcA, 3vqdA, 3vqeA, 3vqpA, 3vqqA.
 
Q5QGH9 Q5QGH9_SIV Pol protein {ECO:0000313|EMBL:AAV65312.1}
2samA.
18.
P35956 POL_VILVK Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2, 3.6.1.23)
3hpgA, 3hphA.
 
P32542 POL_EIAVC Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2)
1fmbA, 2fmbA.
 
P03371 POL_EIAVY Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2)
1eqiA.
 
P11204 POL_EIAV9 Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2)
1ducA, 1dunA.
19.
P03362 POL_HTL1A Gag-Pro-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4)
1qrjA, 2b7fA.
20.
P03354 POL_RSVP Gag-Pro-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4, 2.7.7.49, 2.7.7.7, 3.1.26.4)
1c0mA, 1c1aA, 3tirA, 4fw1A, 4fw2A.
 
O92956 POL_RSVSB Gag-Pro-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4, 2.7.7.49, 2.7.7.7, 3.1.26.4)
1a5vA, 1a5wA, 1a5xA, 1asuA, 1asvA, 1aswA, 1cxqA, 1cxuA, 1cz9A, 1czbA, 1vsdA, 1vseA, 1vsfA, 1vshA, 1vsiA, 1vsjA, 1vskA, 1vslA, 1vsmA, 3o4nA, 3o4qA.
21.
Q66972 Q66972_9RETR POL protein {ECO:0000313|EMBL:CAA40318.1}
2hahA, 4fivA.
 
P16088 POL_FIVPE Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2, 3.6.1.23)
1b11A, 1dutA, 1f7dA, 1f7kA, 1f7nA, 1f7oA, 1f7pA, 1f7qA, 1f7rA, 1fivA, 2fivA, 2hahA, 3fivA, 3ogpA, 3ogqA, 4fivA, 4mq3A, 4pa1A, 5fivA, 6fivA.
22.
P03363 POL_HTLV2 Gag-Pro-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4)
1jvrA.
23.
P19560 POL_BIV29 Gag-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
3kkrA, 3kksA.
24.
P05959 POL_HV1RH Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
2fxeA.
 
P12499 POL_HV1Z2 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1hxwA, 1proA, 1vijA, 1vikA, 2wl0A, 2xyeA, 2xyfA, 3kf0A, 3kfnA, 3kfpA, 3kfrA, 3kfsA, 4dqbA, 4dqcA, 4dqeA, 4dqfA, 4dqgA, 4dqhA, 4e43A, 4ej8A, 4ejdA, 4ejkA, 4ejlA, 4k4pA, 4k4qA, 4k4rA.
 
P05897 POL_SIVMK Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1c6vX, 1ecwA, 1ed1A.
 
P18042 POL_HV2G1 Gag-Pol polyprotein (E.C. 3.4.23.47, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1nc8A, 1v1eA, 2cb7A, 2e1xA, 2iwjA.
 
Q90VT5 Q90VT5_9HIV1 Gag-Pol fusion polyprotein {ECO:0000313|EMBL:BAB55907.1}
3d3tA.
 
P24740 POL_HV1U4 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1ncpC, 3lzsA, 3lzuB.
 
P03369 POL_HV1A2 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1aidA, 1b6jA, 1b6kA, 1b6lA, 1b6mA, 1b6nA, 1b6oA, 1b6pA, 1cpiA, 1d4kA, 1d4lA, 1f7aA, 1kj4A, 1kj7A, 1kjfA, 1kjgA, 1kjhA, 1kzkA, 1mt7A, 1mt8A, 1mt9A, 1mtbA, 1mtrA, 1n49A, 1t3rA, 1tsqA, 1tsuA, 1ytgA, 1ythA, 1z1hA, 1z1rA, 2aidA, 2f3kA, 2fguA, 2fgvA, 2fnsA, 2fntA, 2j9jA, 2j9kA, 2je4A, 2nxdA, 2nxlA, 2nxmA, 2q3kA, 2qhyA, 2qhzA, 2qi0A, 2qi1A, 2qi3A, 2qi4A, 2qi5A, 2qi6A, 2qi7A, 3aidA, 3bxrA, 3bxsA, 3ekpA, 3ekqA, 3ektA, 3ekvA, 3ekwA, 3ekxA, 3ekyA, 3el0A, 3el1A, 3el4A, 3el5A, 3el9A, 3em3A, 3em4A, 3em6A, 3fsmA, 3gi0A, 3gi4A, 3gi5A, 3gi6A, 3hauA, 3hawA, 3hboA, 3hdkA, 3hloA, 3hvpA, 3i7eA, 3iawA, 3ka2A, 3lzvA, 3mxdA, 3mxeA, 3nwqA, 3nwxA, 3nxnA, 3nygA, 3o9fA, 3o9gA, 3o9hA, 3o9iA, 3oxvB, 3oxwA, 3oxxA, 3oy4A, 3r4bA, 4ep2A, 4ep3A, 4epjA, 4eq0A, 4eqjA, 4f73A, 4f74A, 4f75A, 4f76A, 4hvpA, 4obdA, 4obfA, 4obgA, 4obhA, 4objA, 4obkA, 4qj2A, 4qj6A, 4qj7A, 4qj8A, 4qj9A, 4qjaB, 7hvpA, 8hvpA.
 
P12497 POL_HV1N5 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1a43A, 1a8oA, 1afvA, 1ak4C, 1aumA, 1b92A, 1b9dA, 1b9fA, 1bajA, 1bhlA, 1bi4A, 1bisA, 1biuA, 1bizA, 1bl3A, 1hiwA, 1itgA, 1k6yA, 1m9dC, 1qs4A, 1uphA, 1wjbA, 1wjdA, 1wknA, 1za9A, 2b4jA, 2golA, 2gonA, 2h3fA, 2h3iA, 2h3qA, 2h3vA, 2h3zA, 2hmxA, 2hvpA, 2itgA, 2jprA, 2jygA, 2jylA, 2lf4A, 2lyaA, 2lybA, 2m3zA, 2m8lA, 2m8nA, 2m8pA, 2ontA, 2pwmA, 2pwoA, 2pxrC, 2x2dD, 2xdeA, 2xv6A, 2xxmA, 3av9A, 3avaA, 3avbA, 3avcA, 3avfA, 3avgA, 3avhA, 3avjA, 3avkA, 3avlA, 3avmA, 3avnA, 3dikA, 3dphA, 3ds0A, 3ds1A, 3ds2A, 3ds3A, 3ds4A, 3ds5A, 3dtjA, 3gv2A, 3h47A, 3h4eA, 3lptA, 3lpuA, 3lryA, 3mgeA, 3nf6A, 3nf7A, 3nf8A, 3nf9A, 3nfaA, 3p05A, 3p0aA, 3s85A, 3wneA, 3wnfA, 3wngA, 3wnhA, 4ah9A, 4ahrA, 4ahsA, 4ahtA, 4ahuA, 4ahvA, 4cocA, 4copA, 4dgaC, 4dgeC, 4dmnA, 4e1mA, 4e1nA, 4e91A, 4e92A, 4gvmA, 4gw6A, 4id1A, 4ipyA, 4jlhA, 4jmuA, 4lqwC, 4nx4C, 4o0jA, 4o55A, 4o5bA, 4phvA, 4qnbA, 4wymA, 5hvpA, 9hvpA.
 
P35963 POL_HV1Y2 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1f6uA, 1k6cA, 1k6pA, 1k6tA, 1k6vA, 1mfsA, 1t7iA, 1t7jA, 1wjaA, 1wjcA, 2jo0A, 2k1cA, 2l6eA, 3oq7A, 3oqaA, 3oqdA, 3otsA, 3otyA, 3ou1A, 3ou3A, 3ou4A, 3ouaA, 3oubA, 3oucA, 3oudA, 3pj6A, 3u7sA, 4a6bA, 4a6cA.
 
O12158 POL_HV192 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
2r5pA, 2r5qA, 2r8nA.
 
P03367 POL_HV1BR Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1a8gA, 1a8kA, 1a94A, 1aaqA, 1d4sA, 1d4yA, 1dazC, 1difA, 1fqxA, 1hhpA, 1hniB, 1hpoA, 1hpxA, 1hsgA, 1hvlA, 1iiqA, 1iziA, 1lzqA, 1m0bA, 1mrwA, 1mrxA, 1msmA, 1msnA, 1nh0A, 1rl8A, 1s6gA, 1sdtA, 1sduA, 1sdvA, 1sguA, 1sh9A, 1sp5A, 1u8gA, 1upjA, 1xl2A, 1xl5A, 1z8cA, 1zbgA, 1zj7A, 1zlfA, 1zpkA, 1ztzA, 2a1eA, 2az8A, 2az9A, 2azbA, 2azcA, 2b7zB, 2bb9A, 2fndP, 2hb2A, 2hb4A, 2hc0A, 2hndB, 2hnyB, 2ienA, 2o4kA, 2o4lA, 2o4nA, 2o4pA, 2o4sA, 2p3bA, 2pk5A, 2pk6A, 2pqzA, 2pwcA, 2pwrA, 2pymA, 2pynA, 2q63A, 2q64A, 2qakA, 2qciA, 2qd6A, 2qd7A, 2qd8A, 2qhcA, 2qnnA, 2qnpA, 2qnqA, 2r43A, 2upjA, 2z4oA, 2zgaA, 2zyeA, 3a2oA, 3bheA, 3bvaA, 3bvbA, 3cktA, 3djkA, 3dk1A, 3fx5A, 3ggtA, 3gguA, 3h5bA, 3i6oA, 3i8wA, 3jvwA, 3jvyA, 3jw2A, 3kdbA, 3kdcA, 3kddA, 3nduA, 3ndwA, 3ndxA, 3nlsA, 3pwmA, 3pwrA, 3qbfA, 3qihA, 3qn8A, 3qozA, 3qp0A, 3qpjA, 3qrmA, 3qroA, 3qrsA, 3st5A, 3t11A, 3t3cA, 3tofA, 3togA, 3tohA, 3ttpA, 3ucbA, 3uf3A, 3ufnA, 3uhlA, 3vf5A, 3vf7A, 3vfbA, 4dfgA, 4fafA, 4fe6A, 4fl8A, 4flgB, 4fm6B, 4gb2A, 4hdbA, 4hdfB, 4hdpB, 4he9A, 4hegB, 4hlaA, 4j54A, 4j55A, 4j5jA, 4jecA, 7upjA.
 
P0C6F2 POL_HV1LW Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
3lp3A, 3th9A, 3vfaA, 4i8wA, 4i8zA, 4mc1A, 4mc2A, 4mc6A, 4mc9A, 4nyfA, 4qgiA.
 
P05961 POL_HV1MN Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1aafA.
 
P03366 POL_HV1B1 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1a9mA, 1ajvA, 1ajxA, 1axaA, 1bqmA, 1bqnA, 1c9rA, 1d4hA, 1d4iA, 1d4jA, 1dloA, 1dw6C, 1ebkC, 1ebwA, 1ebyA, 1ebzA, 1ec0A, 1ec1A, 1ec2A, 1ec3A, 1eetA, 1g35A, 1gnmA, 1gnnA, 1gnoA, 1harA, 1hbvA, 1hefE, 1hegE, 1hihA, 1hmvA, 1hniA, 1hnvA, 1hosA, 1hpsA, 1hpzA, 1hqeA, 1hquA, 1hrhA, 1hteA, 1htfA, 1htgA, 1hviA, 1hvkA, 1hvpA, 1hvuA, 1hysA, 1ikvA, 1ikwA, 1ikxA, 1ikyA, 1j5oA, 1merA, 1mesA, 1metA, 1meuA, 1n5yA, 1n6qA, 1npaA, 1npvA, 1npwA, 1qe1A, 1qmcA, 1r0aA, 1rdhA, 1rtdA, 1rvlA, 1rvmA, 1rvnA, 1rvoA, 1rvpA, 1rvqA, 1rvrA, 1s6pA, 1s6qA, 1s9eA, 1s9gA, 1sbgA, 1suqA, 1sv5A, 1t03A, 1t05A, 1t7kA, 1tv6A, 1tvrA, 1uwbA, 1w5vA, 1w5wA, 1w5xA, 1w5yA, 1yt9A, 1zp8A, 1zpaA, 1zsfA, 1zsrA, 2aquA, 2b5jA, 2b6aA, 2banA, 2bbbA, 2be2A, 2exfA, 2fdeA, 2g69A, 2hb3A, 2hmiA, 2hnzB, 2hs1A, 2hs2A, 2i4dA, 2i4uA, 2i4vA, 2i4wA, 2i4xA, 2i5jB, 2iajA, 2ic3A, 2idwA, 2ieoA, 2jzwA, 2l45A, 2l46A, 2l4lA, 2uxzA, 2uy0A, 2vg5A, 2vg6A, 2vg7A, 2wkzA, 2ykmA, 2yknA, 2zd1A, 2ze2A, 3aviA, 3bgrA, 3dlkA, 3ggaG, 3ggvB, 3ggxA, 3hvtA, 3ig1A, 3irxA, 3is9A, 3isnC, 3ithA, 3jsmA, 3jytA, 3k2pA, 3k4vA, 3kleA, 3klfA, 3klgA, 3klhA, 3kliA, 3ndtA, 3nu3A, 3nu4A, 3nu5A, 3nu6A, 3nu9A, 3nujA, 3nuoA, 3ok9A, 3psuA, 3qaaA, 3qlhA, 3qo9A, 3tkgA, 3tkwA, 3tl9A, 3tlhA, 3v4iA, 3v6dA, 3v81A, 3zpsA, 3zptA, 3zpuA, 4coeA, 4cp7A, 4cpqA, 4cprA, 4cpsA, 4cptA, 4cpuA, 4cpwA, 4cpxA, 4dg1A, 4g1qA, 4h4mA, 4h4oA, 4i2pA, 4i2qA, 4i7gA, 4iclA, 4id5A, 4idkA, 4ifvA, 4ifyA, 4ig0A, 4ig3A, 4je2A, 4kfbA, 4kkoA, 4ko0A, 4lslA, 4lsnA, 4mfbA, 4o44A, 4o4gA, 4ojrA, 4pquA, 4puoA, 4pwdA, 4q0bA, 4qagA, 4r5pA, 4u8wA, 4we1A, 5ah7A.
 
P04587 POL_HV1B5 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1bdlA, 1bdqA, 1bdrA, 1fejC, 1ff0C, 1fffC, 1ffiC, 1fg6C, 1fg8C, 1fgcC, 1g2kA, 1hpvA, 1hvjA, 1hvsA, 1k1tA, 1k1uA, 1k2bA, 1k2cA, 1q9pA, 1tcxA, 1wjeA, 1wjfA, 2aocA, 2aodA, 2aoeA, 2aofA, 2aogA, 2aohA, 2aoiA, 2aojA, 2avmA, 2avoA, 2avqA, 2avsA, 2avvA, 2bpvA, 2bpwA, 2bpxA, 2bpyA, 2bpzA, 2f80A, 2f81A, 2f8gA, 2g3lA, 2nmwA, 2nmyA, 2nmzA, 2nnkA, 2nnpA, 2r38A, 2r3tA, 2r3wA, 2z54A, 3b7vA, 3b80A, 3bc4A, 3bgbA, 3bgcA, 3cywA, 3cyxA, 3d1xA, 3d1yA, 3d1zA, 3d20A.
 
P04584 POL_HV2RO Gag-Pol polyprotein (E.C. 3.4.23.47, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1e0eA, 1hiiA, 1hshA, 1hsiA, 1idaA, 1idbA, 1ivpA, 1ivqA, 1jldA, 1mu2A, 1phvA, 2hpeA, 2hpfA, 2k4eA, 2k4hA, 2k4iA, 2mipA, 2phvA, 3ebzA, 3ec0A, 3ecgA, 3f9kA, 3upjA, 4upjA, 5upjA, 6upjA.
 
P04588 POL_HV1MA Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
3ixoA.
 
P05896 POL_SIVM1 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1az5A, 1c6vA, 1sivA, 1tcwA, 1ytiA, 1ytjA.
 
P04585 POL_HV1H2 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1a30A, 1bv7A, 1bv9A, 1bveA, 1bvgA, 1bwaA, 1bwbA, 1c0tA, 1c0uA, 1c1bA, 1c1cA, 1dmpA, 1dtqA, 1dttA, 1ep4A, 1eskA, 1ex4A, 1exqA, 1fb7A, 1fk9A, 1fkoA, 1fkpA, 1g6lA, 1hivA, 1hvhA, 1hvrA, 1hwrA, 1hxbA, 1jkhA, 1jlaA, 1jlbA, 1jlcA, 1jleA, 1jlfA, 1jlgA, 1jlqA, 1klmA, 1lkuA, 1lv1A, 1lw0A, 1lw2A, 1lwcA, 1lweA, 1lwfA, 1ncpN, 1o1wA, 1odwA, 1odxA, 1odyA, 1qbrA, 1qbsA, 1qbtA, 1qbuA, 1revA, 1rt1A, 1rt2A, 1rt3A, 1rt4A, 1rt5A, 1rt6A, 1rt7A, 1rtdB, 1rthA, 1rtiA, 1rtjA, 1s1tA, 1s1uA, 1s1vA, 1s1wA, 1s1xA, 1t05B, 1tamA, 1tktA, 1tkxA, 1tkzA, 1tl1A, 1tl3A, 1vrtA, 1vruA, 2hndA, 2hnyA, 2hnzA, 2kodA, 2nphA, 2oppA, 2opqA, 2oprA, 2opsA, 2rf2A, 2rkiA, 2whhA, 2womA, 2wonA, 2ynfA, 2yngA, 2ynhA, 2yniA, 3ao2A, 3c6tA, 3c6uA, 3di6A, 3dleA, 3dlgA, 3dm2A, 3dmjA, 3dokA, 3dolA, 3doxA, 3drpA, 3drrA, 3drsA, 3dyaA, 3e01A, 3ffiA, 3i0rA, 3i0sA, 3kjvA, 3kk1A, 3kk2A, 3kk3A, 3kt2A, 3kt5A, 3lakA, 3lalA, 3lamA, 3lanA, 3lp0A, 3lp1A, 3lp2A, 3m8pA, 3m8qA, 3mecA, 3medA, 3meeA, 3megA, 3mimA, 3n3iA, 3nbpA, 3phvA, 3qipA, 3t19A, 3t1aA, 3tamA, 4b3oA, 4b3pA, 4b3qA, 4i7fA, 4kseB, 4kv8A, 4ncgA, 4q5mA, 4qlhA.
25.
Q70XD7 Q70XD7_9HIV1 Gag-Pol polyprotein {ECO:0000256|SAAS:SAAS00061981}
2ypkC, 2yplC.

List of Pfam domains

  Pfam code Pfam id Description
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase)
PF00075 RNase_H RNase H
PF00077 RVP Retroviral aspartyl protease
PF00098 zf-CCHC Zinc knuckle
PF00540 Gag_p17 gag gene protein p17 (matrix protein)
PF00552 IN_DBD_C Integrase DNA binding domain
PF00607 Gag_p24 gag gene protein p24 (core nucleocapsid protein)
PF00665 rve Integrase core domain
PF00692 dUTPase dUTPase
PF01140 Gag_MA Matrix protein (MA), p15
PF01141 Gag_p12 Gag polyprotein, inner coat protein p12
PF02022 Integrase_Zn Integrase Zinc binding domain
PF02093 Gag_p30 Gag P30 core shell protein
PF02228 Gag_p19 Major core protein p19
PF02813 Retro_M Retroviral M domain
PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
PF03539 Spuma_A9PTase Spumavirus aspartic protease (A9)
PF03732 Retrotrans_gag Retrotransposon gag protein
PF06815 RVT_connect Reverse transcriptase connection domain
PF06817 RVT_thumb Reverse transcriptase thumb domain
PF08333 DUF1725 Protein of unknown function (DUF1725)
PF08705 Gag_p6 Gag protein p6
PF11474 N-Term_TEN Telomerase reverse transcriptase TEN domain
PF12009 Telomerase_RBD Telomerase ribonucleoprotein complex - RNA binding domain
PF12384 Peptidase_A2B Ty3 transposon peptidase
PF14529 Exo_endo_phos_2 Endonuclease-reverse transcriptase
PB002519
PB006784
PB009245
PB018048
PB044466
PB046197
PB067587
PB082164
PB133292
PB141086

 

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