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Pfam domain PF00077

Pfam domain PF00077

Pfam domain:   
  PF00077 - Retroviral aspartyl protease  

Below is the list of protein structures in the PDB containing Pfam domain PF00077.

+/- Key to table

Structures in the PDB containing this domain: 1196

  Pfam domain
architecture
UniProt
accession
UniProt id Protein name PDB structures
1.
Q7SSI0 Q7SSI0_9HIV1 Protease
2g69A, 3oxcA, 3s53A, 3s54A, 3s56A, 4kb9A.
 
Q7SSE3 Q7SSE3_9HIV1 Protease
3s43A.
 
O09893 O09893_9HIV1 Protease
1c6xA, 1c6yA, 1c6zA.
 
Q8Q3H0 Q8Q3H0_9HIV1 Pol protein
1wbkA, 1wbmA, 2cejA, 2cemA, 4a4qA.
 
O38707 O38707_9HIV1 Protease
2psvA.
 
O38710 O38710_9HIV1 Protease
2q54A, 2q5kA.
 
Q82134 Q82134_9DELA Protease
3linA, 3liqA, 3litA, 3livA, 3lixA, 3liyA.
 
O38719 O38719_9HIV1 Protease
2q55A.
 
O38723 O38723_9HIV1 Protease
2i0aA, 2psuA.
 
P26315 GAG_AVIMA Proteinase p15 (E.C. 3.4.23.-)
1mvpA, 2mvpA.
 
O38732 O38732_9HIV1 Protease
3dckA, 3dcrA, 3hzcA, 3i2lA, 3ia9A, 3sa3A, 3sa4A, 3sa5A, 3sa6A, 3sa7A, 3sa8A, 3sa9A, 3saaA, 3sabA, 3sacA.
 
O92103 O92103_9HIV1 Protease
1c70A.
 
O92139 O92139_9HIV1 Protease
2bqvA.
 
Q6Q004 Q6Q004_9HIV1 Protease
2p3cA.
 
Q7SPG9 Q7SPG9_9HIV1 Pol protein
2fddA.
 
Q9J006 Q9J006_9HIV1 Protease
4njsA, 4njtA, 4njuA, 4njvA.
 
Q9J2R0 Q9J2R0_9HIV1 Protease
2fleA.
 
O38716 O38716_9HIV1 Protease
2o40A, 3nxeA.
 
Q9Q2G8 Q9Q2G8_9HIV1 V-1 protease
2a4fA.
 
Q90EB9 Q90EB9_9HIV1 Protease
1izhA.
 
Q7SRY5 Q7SRY5_9HIV1 Protease
2p3dA.
 
O38731 O38731_9HIV1 Protease
2i0dA.
 
Q903J0 Q903J0_9HIV1 Protease
1muiB.
 
Q903N5 Q903N5_9HIV1 Protease
2pc0A, 3kf1A.
 
Q66729 Q66729_9RETR Reverse transcriptase
2fmbA.
 
Q5RZ09 Q5RZ09_9HIV1 Protease
2cenA.
 
Q9Q288 Q9Q288_9HIV1 V-1 PROTEASE protein
1ohrA.
 
Q9W9R3 Q9W9R3_9HIV2 Protease
3s45A.
 
Q5RTL1 Q5RTL1_9HIV1 Protease
1rq9A, 1tw7A.
 
Q9QM22 Q9QM22_9HIV1 Protease
1rpiA, 1rv7A, 4gyeA, 4gzfA.
2.
Q6BB74 Q6BB74_9HIV1 Pol protein
2p3aA.
 
Q4VE97 Q4VE97_9HIV1 Pol protein
1hvcA.
 
Q9WFL7 Q9WFL7_9HIV1 Pol polyprotein
2qmpA, 3m9fA, 4ll3A.
 
Q8UM83 Q8UM83_9HIV1 Pol protein
2i5jB.
3.
Q000H7 Q000H7_9HIV1 Pol protein
3r0wA, 3r0yA, 3so9A, 3spkA, 4eyrA, 4faeA, 4fafA, 4l1aA, 4nkkA.
 
Q994Q3 Q994Q3_9HIV1 Truncated pol polyprotein
3u71A.
 
Q90K99 Q90K99_9HIV1 Pol polyprotein
3o99A, 3o9aA, 3o9bA, 3o9cA, 3o9dA, 3o9eA, 4djoA, 4djpA, 4djqA, 4djrA.
 
Q90SN9 Q90SN9_9HIV1 Pol protein
2o4nA.
 
Q90HG9 Q90HG9_9HIV1 Pol polyprotein
2fxdA.
 
Q90JJ9 Q90JJ9_9HIV1 Pol polyprotein
4m8xA, 4m8yA.
 
Q7SMT3 Q7SMT3_9HIV1 Pol polyprotein
2b60A.
4.
P07570 VPRT_MPMV Protease (E.C. 3.4.23.-)
1nsoA, 2d4lA, 2d4mA, 2d4nA, 3sqfA, 3tp1A, 3tpwA.
5.
A0F7J4 A0F7J4_9HIV1 Pol protein
2rkfA.
 
A0F6C5 A0F6C5_9HIV1 Pol protein
2rkgA.
6.
P10274 PRO_HTL1A Gag-Pro polyprotein (E.C. 3.4.23.-)
1o0jA, 1tp1A.
7.
Q77YH0 Q77YH0_9RETR Pr76 polyprotein
2ihxA.
 
O92954 GAG_RSVSB Gag-Pro polyprotein (E.C. 3.4.23.-)
1d1dA.
 
P03322 GAG_RSVP Gag-Pro polyprotein (E.C. 3.4.23.-)
1a6sA, 1baiA, 1em9A, 1eoqA, 1p7nA, 2rspA, 2x8qA, 3g0vA, 3g1gA, 3g1iA, 3g21A, 3g26A, 3g28A, 3g29A.
8.
Q2F7J3 POL_XMRV3 Gag-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4)
3v1oA, 3v1qA, 3v1rA.
 
A1Z651 POL_XMRV6 Gag-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4)
3nr6A, 3p1gA, 4e89A, 4hkqA.
 
Q9E7M1 Q9E7M1_9GAMR Putative gag-pro-pol polyprotein
3slzA, 3sm1A, 3sm2A, 4exhA.
 
P03355 POL_MLVMS Gag-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4)
1d0eA, 1d1uA, 1i6jA, 1mmlA, 1n4lA, 1nndA, 1qaiA, 1qajA, 1rw3A, 1zttA, 1ztwA, 2fjvA, 2fjwA, 2fjxA, 2fvpA, 2fvqA, 2fvrA, 2fvsA, 2hb5A, 2m9uA, 2ms1A, 2r2rA, 2r2sA, 2r2tA, 2r2uA, 3fsiA, 3nnqA, 4m94A, 4m95A, 4mh8A, 4nzgA.
9.
O92810 O92810_MPMV Pr95
3tpnA, 3tpsA, 3tpyA, 3tq3A, 3tq4A, 3tq5A, 3trlA, 3trnA, 3ts6A, 3tslA, 3ttaA.
10.
A7YKL0 A7YKL0_9HIV1 Pol protein
3dm2A, 3dmjA, 3dokA, 3dolA.
 
Q72498 Q72498_9HIV1 POL polyprotein
3ao1A, 3ao3A, 3ao4A, 3ao5A, 3l3uA, 3l3vA, 3ovnA, 3vq4A, 3vq5A, 3vq6A, 3vq7A, 3vq8A, 3vq9A, 3vqaA, 3vqbA, 3vqcA, 3vqdA, 3vqeA, 3vqpA, 3vqqA.
 
Q5QGH9 Q5QGH9_SIV Pol protein
2samA.
 
Q74085 Q74085_9HIV1 Pol
2opqB.
 
Q673V0 Q673V0_9HIV1 Pol protein
3mwsA.
 
Q74596 Q74596_9HIV1 Pol
3dm2B, 3dmjB.
 
Q88016 Q88016_SIVM3 Pol polyprotein
1sipA.
11.
P11204 POL_EIAV9 Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2)
1ducA, 1dunA.
 
P03371 POL_EIAVY Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2)
1eqiA.
 
P35956 POL_VILVK Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2, 3.6.1.23)
3hpgA, 3hphA.
 
P32542 POL_EIAVC Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2)
1fmbA, 2fmbA.
12.
P03362 POL_HTL1A Gag-Pro-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4)
1qrjA, 2b7fA.
13.
O92956 POL_RSVSB Gag-Pro-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4, 2.7.7.49, 2.7.7.7, 3.1.26.4)
1a5vA, 1a5wA, 1a5xA, 1asuA, 1asvA, 1aswA, 1cxqA, 1cxuA, 1cz9A, 1czbA, 1vsdA, 1vseA, 1vsfA, 1vshA, 1vsiA, 1vsjA, 1vskA, 1vslA, 1vsmA, 3o4nA, 3o4qA.
 
P03354 POL_RSVP Gag-Pro-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4, 2.7.7.49, 2.7.7.7, 3.1.26.4)
1c0mA, 1c1aA, 3tirA, 4fw1A, 4fw2A.
14.
Q66972 Q66972_9RETR POL protein
2hahA, 4fivA.
 
P16088 POL_FIVPE Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2, 3.6.1.23)
1b11A, 1dutA, 1f7dA, 1f7kA, 1f7nA, 1f7oA, 1f7pA, 1f7qA, 1f7rA, 1fivA, 2fivA, 2hahA, 3fivA, 3ogpA, 3ogqA, 4fivA, 5fivA, 6fivA.
15.
P03363 POL_HTLV2 Gag-Pro-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4)
1jvrA.
16.
P19560 POL_BIV29 Gag-Pol polyprotein (E.C. 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
3kkrA, 3kksA.
17.
P03367 POL_HV1BR Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1a8gA, 1a8kA, 1a94A, 1aaqA, 1d4sA, 1d4yA, 1dazC, 1difA, 1fqxA, 1hhpA, 1hniB, 1hpoA, 1hpxA, 1hsgA, 1hvlA, 1iiqA, 1iziA, 1lzqA, 1m0bA, 1mrwA, 1mrxA, 1msmA, 1msnA, 1nh0A, 1rl8A, 1s6gA, 1sdtA, 1sduA, 1sdvA, 1sguA, 1sh9A, 1sp5A, 1u8gA, 1upjA, 1xl2A, 1xl5A, 1z8cA, 1zbgA, 1zj7A, 1zlfA, 1zpkA, 1ztzA, 2a1eA, 2az8A, 2az9A, 2azbA, 2azcA, 2b7zB, 2bb9A, 2fndP, 2hb2A, 2hb4A, 2hc0A, 2hndB, 2hnyB, 2ienA, 2o4kA, 2o4lA, 2o4nA, 2o4pA, 2o4sA, 2p3bA, 2pk5A, 2pk6A, 2pqzA, 2pwcA, 2pwrA, 2pymA, 2pynA, 2q63A, 2q64A, 2qakA, 2qciA, 2qd6A, 2qd7A, 2qd8A, 2qhcA, 2qnnA, 2qnpA, 2qnqA, 2r43A, 2upjA, 2z4oA, 2zgaA, 2zyeA, 3a2oA, 3bheA, 3bvaA, 3bvbA, 3cktA, 3djkA, 3dk1A, 3fx5A, 3ggtA, 3gguA, 3h5bA, 3i6oA, 3i8wA, 3jvwA, 3jvyA, 3jw2A, 3kdbA, 3kdcA, 3kddA, 3nduA, 3ndwA, 3ndxA, 3nlsA, 3pwmA, 3pwrA, 3qbfA, 3qihA, 3qn8A, 3qozA, 3qp0A, 3qpjA, 3qrmA, 3qroA, 3qrsA, 3st5A, 3t11A, 3t3cA, 3tofA, 3togA, 3tohA, 3ttpA, 3ucbA, 3uf3A, 3ufnA, 3uhlA, 3vf5A, 3vf7A, 3vfbA, 4dfgA, 4fafA, 4fe6A, 4fl8A, 4flgB, 4fm6B, 4gb2A, 4hdbA, 4hdfB, 4hdpB, 4he9A, 4hegB, 4hlaA, 4j54A, 4j55A, 4j5jA, 4jecA, 7upjA.
 
P04584 POL_HV2RO Gag-Pol polyprotein (E.C. 3.4.23.47, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1e0eA, 1hiiA, 1hshA, 1hsiA, 1idaA, 1idbA, 1ivpA, 1ivqA, 1jldA, 1mu2A, 1phvA, 2hpeA, 2hpfA, 2k4eA, 2k4hA, 2k4iA, 2mipA, 2phvA, 3ebzA, 3ec0A, 3ecgA, 3f9kA, 3upjA, 4upjA, 5upjA, 6upjA.
 
P35963 POL_HV1Y2 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1f6uA, 1k6cA, 1k6pA, 1k6tA, 1k6vA, 1mfsA, 1t7iA, 1t7jA, 1wjaA, 1wjcA, 2jo0A, 2k1cA, 2l6eA, 3oq7A, 3oqaA, 3oqdA, 3otsA, 3otyA, 3ou1A, 3ou3A, 3ou4A, 3ouaA, 3oubA, 3oucA, 3oudA, 3pj6A, 3u7sA, 4a6bA, 4a6cA.
 
P12499 POL_HV1Z2 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1hxwA, 1proA, 1vijA, 1vikA, 2wl0A, 2xyeA, 2xyfA, 3kf0A, 3kfnA, 3kfpA, 3kfrA, 3kfsA, 4dqbA, 4dqcA, 4dqeA, 4dqfA, 4dqgA, 4dqhA, 4e43A, 4ej8A, 4ejdA, 4ejkA, 4ejlA, 4k4pA, 4k4qA, 4k4rA.
 
O12158 POL_HV192 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
2r5pA, 2r5qA, 2r8nA.
 
P05897 POL_SIVMK Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1c6vX, 1ecwA, 1ed1A.
 
P12497 POL_HV1N5 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1a43A, 1a8oA, 1afvA, 1ak4C, 1aumA, 1b92A, 1b9dA, 1b9fA, 1bajA, 1bhlA, 1bi4A, 1bisA, 1biuA, 1bizA, 1bl3A, 1hiwA, 1itgA, 1k6yA, 1m9dC, 1qs4A, 1uphA, 1wjbA, 1wjdA, 1wknA, 1za9A, 2b4jA, 2golA, 2gonA, 2h3fA, 2h3iA, 2h3qA, 2h3vA, 2h3zA, 2hmxA, 2hvpA, 2itgA, 2jprA, 2jygA, 2jylA, 2lf4A, 2lyaA, 2lybA, 2m3zA, 2m8lA, 2m8nA, 2m8pA, 2ontA, 2pwmA, 2pwoA, 2pxrC, 2x2dD, 2xdeA, 2xv6A, 2xxmA, 3av9A, 3avaA, 3avbA, 3avcA, 3avfA, 3avgA, 3avhA, 3avjA, 3avkA, 3avlA, 3avmA, 3avnA, 3dikA, 3dphA, 3ds0A, 3ds1A, 3ds2A, 3ds3A, 3ds4A, 3ds5A, 3dtjA, 3gv2A, 3h47A, 3h4eA, 3lptA, 3lpuA, 3lryA, 3mgeA, 3nf6A, 3nf7A, 3nf8A, 3nf9A, 3nfaA, 3p05A, 3p0aA, 3s85A, 3wneA, 3wnfA, 3wngA, 3wnhA, 4ah9A, 4ahrA, 4ahsA, 4ahtA, 4ahuA, 4ahvA, 4cocA, 4copA, 4dgaC, 4dgeC, 4dmnA, 4e1mA, 4e1nA, 4e91A, 4e92A, 4gvmA, 4gw6A, 4id1A, 4ipyA, 4jlhA, 4jmuA, 4lqwC, 4nx4C, 4o0jA, 4o55A, 4o5bA, 4phvA, 5hvpA, 9hvpA.
 
P0C6F2 POL_HV1LW Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
3lp3A, 3th9A, 3vfaA, 4i8wA, 4i8zA, 4mc1A, 4mc2A, 4mc6A, 4mc9A, 4nyfA, 4qgiA.
 
Q90VT5 Q90VT5_9HIV1 Gag-Pol fusion polyprotein
3d3tA.
 
P18042 POL_HV2G1 Gag-Pol polyprotein (E.C. 3.4.23.47, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1nc8A, 1v1eA, 2cb7A, 2e1xA, 2iwjA.
 
P05896 POL_SIVM1 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1az5A, 1c6vA, 1sivA, 1tcwA, 1ytiA, 1ytjA.
 
P24740 POL_HV1U4 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1ncpC, 3lzsA, 3lzuB.
 
P04587 POL_HV1B5 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1bdlA, 1bdqA, 1bdrA, 1fejC, 1ff0C, 1fffC, 1ffiC, 1fg6C, 1fg8C, 1fgcC, 1g2kA, 1hpvA, 1hvjA, 1hvsA, 1k1tA, 1k1uA, 1k2bA, 1k2cA, 1q9pA, 1tcxA, 1wjeA, 1wjfA, 2aocA, 2aodA, 2aoeA, 2aofA, 2aogA, 2aohA, 2aoiA, 2aojA, 2avmA, 2avoA, 2avqA, 2avsA, 2avvA, 2bpvA, 2bpwA, 2bpxA, 2bpyA, 2bpzA, 2f80A, 2f81A, 2f8gA, 2g3lA, 2nmwA, 2nmyA, 2nmzA, 2nnkA, 2nnpA, 2r38A, 2r3tA, 2r3wA, 2z54A, 3b7vA, 3b80A, 3bc4A, 3bgbA, 3bgcA, 3cywA, 3cyxA, 3d1xA, 3d1yA, 3d1zA, 3d20A.
 
P05961 POL_HV1MN Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1aafA.
 
P03369 POL_HV1A2 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1aidA, 1b6jA, 1b6kA, 1b6lA, 1b6mA, 1b6nA, 1b6oA, 1b6pA, 1cpiA, 1d4kA, 1d4lA, 1f7aA, 1kj4A, 1kj7A, 1kjfA, 1kjgA, 1kjhA, 1kzkA, 1mt7A, 1mt8A, 1mt9A, 1mtbA, 1mtrA, 1n49A, 1t3rA, 1tsqA, 1tsuA, 1ytgA, 1ythA, 1z1hA, 1z1rA, 2aidA, 2f3kA, 2fguA, 2fgvA, 2fnsA, 2fntA, 2j9jA, 2j9kA, 2je4A, 2nxdA, 2nxlA, 2nxmA, 2q3kA, 2qhyA, 2qhzA, 2qi0A, 2qi1A, 2qi3A, 2qi4A, 2qi5A, 2qi6A, 2qi7A, 3aidA, 3bxrA, 3bxsA, 3ekpA, 3ekqA, 3ektA, 3ekvA, 3ekwA, 3ekxA, 3ekyA, 3el0A, 3el1A, 3el4A, 3el5A, 3el9A, 3em3A, 3em4A, 3em6A, 3fsmA, 3gi0A, 3gi4A, 3gi5A, 3gi6A, 3hauA, 3hawA, 3hboA, 3hdkA, 3hloA, 3hvpA, 3i7eA, 3iawA, 3ka2A, 3lzvA, 3mxdA, 3mxeA, 3nwqA, 3nwxA, 3nxnA, 3nygA, 3o9fA, 3o9gA, 3o9hA, 3o9iA, 3oxvB, 3oxwA, 3oxxA, 3oy4A, 3r4bA, 4ep2A, 4ep3A, 4epjA, 4eq0A, 4eqjA, 4f73A, 4f74A, 4f75A, 4f76A, 4hvpA, 7hvpA, 8hvpA.
 
P04585 POL_HV1H2 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1a30A, 1bv7A, 1bv9A, 1bveA, 1bvgA, 1bwaA, 1bwbA, 1c0tA, 1c0uA, 1c1bA, 1c1cA, 1dmpA, 1dtqA, 1dttA, 1ep4A, 1eskA, 1ex4A, 1exqA, 1fb7A, 1fk9A, 1fkoA, 1fkpA, 1g6lA, 1hivA, 1hvhA, 1hvrA, 1hwrA, 1hxbA, 1jkhA, 1jlaA, 1jlbA, 1jlcA, 1jleA, 1jlfA, 1jlgA, 1jlqA, 1klmA, 1lkuA, 1lv1A, 1lw0A, 1lw2A, 1lwcA, 1lweA, 1lwfA, 1ncpN, 1o1wA, 1odwA, 1odxA, 1odyA, 1qbrA, 1qbsA, 1qbtA, 1qbuA, 1revA, 1rt1A, 1rt2A, 1rt3A, 1rt4A, 1rt5A, 1rt6A, 1rt7A, 1rtdB, 1rthA, 1rtiA, 1rtjA, 1s1tA, 1s1uA, 1s1vA, 1s1wA, 1s1xA, 1t05B, 1tamA, 1tktA, 1tkxA, 1tkzA, 1tl1A, 1tl3A, 1vrtA, 1vruA, 2hndA, 2hnyA, 2hnzA, 2kodA, 2nphA, 2oppA, 2opqA, 2oprA, 2opsA, 2rf2A, 2rkiA, 2whhA, 2womA, 2wonA, 2ynfA, 2yngA, 2ynhA, 2yniA, 3ao2A, 3c6tA, 3c6uA, 3di6A, 3dleA, 3dlgA, 3dm2A, 3dmjA, 3dokA, 3dolA, 3doxA, 3drpA, 3drrA, 3drsA, 3dyaA, 3e01A, 3ffiA, 3i0rA, 3i0sA, 3kjvA, 3kk1A, 3kk2A, 3kk3A, 3kt2A, 3kt5A, 3lakA, 3lalA, 3lamA, 3lanA, 3lp0A, 3lp1A, 3lp2A, 3m8pA, 3m8qA, 3mecA, 3medA, 3meeA, 3megA, 3mimA, 3n3iA, 3nbpA, 3phvA, 3qipA, 3t19A, 3t1aA, 3tamA, 4b3oA, 4b3pA, 4b3qA, 4i7fA, 4kseB, 4kv8A, 4ncgA, 4qlhA.
 
P05959 POL_HV1RH Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
2fxeA.
 
P04588 POL_HV1MA Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
3ixoA.
 
P03366 POL_HV1B1 Gag-Pol polyprotein (E.C. 3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2)
1a9mA, 1ajvA, 1ajxA, 1axaA, 1bqmA, 1bqnA, 1c9rA, 1d4hA, 1d4iA, 1d4jA, 1dloA, 1dw6C, 1ebkC, 1ebwA, 1ebyA, 1ebzA, 1ec0A, 1ec1A, 1ec2A, 1ec3A, 1eetA, 1g35A, 1gnmA, 1gnnA, 1gnoA, 1harA, 1hbvA, 1hefE, 1hegE, 1hihA, 1hmvA, 1hniA, 1hnvA, 1hosA, 1hpsA, 1hpzA, 1hqeA, 1hquA, 1hrhA, 1hteA, 1htfA, 1htgA, 1hviA, 1hvkA, 1hvpA, 1hvuA, 1hysA, 1ikvA, 1ikwA, 1ikxA, 1ikyA, 1j5oA, 1merA, 1mesA, 1metA, 1meuA, 1n5yA, 1n6qA, 1npaA, 1npvA, 1npwA, 1qe1A, 1qmcA, 1r0aA, 1rdhA, 1rtdA, 1rvlA, 1rvmA, 1rvnA, 1rvoA, 1rvpA, 1rvqA, 1rvrA, 1s6pA, 1s6qA, 1s9eA, 1s9gA, 1sbgA, 1suqA, 1sv5A, 1t03A, 1t05A, 1t7kA, 1tv6A, 1tvrA, 1uwbA, 1w5vA, 1w5wA, 1w5xA, 1w5yA, 1yt9A, 1zp8A, 1zpaA, 1zsfA, 1zsrA, 2aquA, 2b5jA, 2b6aA, 2banA, 2bbbA, 2be2A, 2exfA, 2fdeA, 2g69A, 2hb3A, 2hmiA, 2hnzB, 2hs1A, 2hs2A, 2i4dA, 2i4uA, 2i4vA, 2i4wA, 2i4xA, 2i5jB, 2iajA, 2ic3A, 2idwA, 2ieoA, 2jzwA, 2l45A, 2l46A, 2l4lA, 2uxzA, 2uy0A, 2vg5A, 2vg6A, 2vg7A, 2wkzA, 2ykmA, 2yknA, 2zd1A, 2ze2A, 3aviA, 3bgrA, 3dlkA, 3ggaG, 3ggvB, 3ggxA, 3hvtA, 3ig1A, 3irxA, 3is9A, 3isnC, 3ithA, 3jsmA, 3jytA, 3k2pA, 3k4vA, 3kleA, 3klfA, 3klgA, 3klhA, 3kliA, 3ndtA, 3nu3A, 3nu4A, 3nu5A, 3nu6A, 3nu9A, 3nujA, 3nuoA, 3ok9A, 3psuA, 3qaaA, 3qlhA, 3qo9A, 3tkgA, 3tkwA, 3tl9A, 3tlhA, 3v4iA, 3v6dA, 3v81A, 3zpsA, 3zptA, 3zpuA, 4dg1A, 4g1qA, 4h4mA, 4h4oA, 4i2pA, 4i2qA, 4i7gA, 4iclA, 4id5A, 4idkA, 4ifvA, 4ifyA, 4ig0A, 4ig3A, 4je2A, 4kfbA, 4kkoA, 4ko0A, 4lslA, 4lsnA, 4mfbA, 4o44A, 4ojrA, 4pquA, 4puoA, 4pwdA, 4q0bA, 4qagA.
18.
Q70XD7 Q70XD7_9HIV1 Gag-pol fusion polyprotein
2ypkC, 2yplC.

List of Pfam domains

  Pfam code Pfam id Description
PF00077 RVP Retroviral aspartyl protease
PF00075 RNase_H RNase H
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase)
PF00098 zf-CCHC Zinc knuckle
PF00540 Gag_p17 gag gene protein p17 (matrix protein)
PF00552 IN_DBD_C Integrase DNA binding domain
PF00607 Gag_p24 gag gene protein p24 (core nucleocapsid protein)
PF00665 rve Integrase core domain
PF00692 dUTPase dUTPase
PF01140 Gag_MA Matrix protein (MA), p15
PF01141 Gag_p12 Gag polyprotein, inner coat protein p12
PF01585 G-patch G-patch domain
PF02022 Integrase_Zn Integrase Zinc binding domain
PF02093 Gag_p30 Gag P30 core shell protein
PF02228 Gag_p19 Major core protein p19
PF02337 Gag_p10 Retroviral GAG p10 protein
PF02813 Retro_M Retroviral M domain
PF06815 RVT_connect Reverse transcriptase connection domain
PF06817 RVT_thumb Reverse transcriptase thumb domain
PF08705 Gag_p6 Gag protein p6
PF14787 zf-CCHC_5 GAG-polyprotein viral zinc-finger
PB133292

 

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