spacer
spacer

Pfam domain PF00060

Pfam domain PF00060

Pfam domain:   
  PF00060 - Ligand-gated ion channel  

Below is the list of protein structures in the PDB containing Pfam domain PF00060.

+/- Key to table

Structures in the PDB containing this domain: 333

  Pfam domain
architecture
UniProt
accession
UniProt id Protein name PDB structures
1.
Q13002 GRIK2_HUMAN Glutamate receptor ionotropic, kainate 2
3qxmA.
 
P42264 GRIK3_RAT Glutamate receptor ionotropic, kainate 3
3olzA, 3s9eA, 3u92A, 3u93A, 3u94A, 4e0wA, 4g8nA, 4igrA, 4mh5A, 4nwcA, 4nwdA.
 
P42260 GRIK2_RAT Glutamate receptor ionotropic, kainate 2
1s50A, 1s7yA, 1s9tA, 1sd3A, 1tt1A, 1yaeA, 2i0bA, 2i0cA, 2xxrA, 2xxtA, 2xxuA, 2xxvA, 2xxwA, 2xxxA, 2xxyA, 3g3fA, 3g3gA, 3g3hA, 3g3iA, 3g3jA, 3g3kA, 3h6gA, 3h6hA, 3qltA, 3qluC, 3qlvC, 4bdlA, 4bdmA, 4bdnA, 4bdoA, 4bdqA, 4bdrA, 4h8iA, 4uqqA.
 
Q63273 GRIK5_RAT Glutamate receptor ionotropic, kainate 5
3om0A, 3om1A, 3qluA, 3qlvA.
 
P19493 GRIA4_RAT Glutamate receptor 4
3en3A, 3epeA, 3fasA, 3fatA, 3keiA, 3kfmA, 4gpaA.
 
P22756 GRIK1_RAT Glutamate receptor ionotropic, kainate 1
1txfA, 1vsoA, 2f34A, 2f35A, 2f36A, 2ojtA, 2pbwA, 2qs1A, 2qs2A, 2qs3A, 2qs4A, 2wkyA, 3c31A, 3c32A, 3c33A, 3c34A, 3c35A, 3c36A, 3gbaA, 3gbbA, 3s2vA, 4dldA, 4e0xA.
 
P39086 GRIK1_HUMAN Glutamate receptor ionotropic, kainate 1
2znsA, 2zntA, 2znuA, 3fuzA, 3fv1A, 3fv2A, 3fvgA, 3fvkA, 3fvnA, 3fvoA, 4mf3A.
2.
P19492 GRIA3_RAT Glutamate receptor 3
3dlnA, 3dp4A, 3lswA, 3lsxA, 3m3fA, 3m3kA, 3o21A, 3p3wA, 3rt6B, 3rt8A, 4f1yA, 4f22A, 4f29A, 4f2oA, 4f2qA, 4f31B, 4f39A, 4f3bA, 4f3gA.
 
P19491 GRIA2_RAT Glutamate receptor 2
1ftjA, 1ftkA, 1ftlA, 1ftmA, 1ftoA, 1fw0A, 1gr2A, 1lb8A, 1lb9A, 1lbbA, 1lbcA, 1m5bA, 1m5cA, 1m5dA, 1m5eA, 1m5fA, 1mm6A, 1mm7A, 1mqdA, 1mqgA, 1mqhA, 1mqiA, 1mqjA, 1ms7A, 1mxuA, 1mxvA, 1mxwA, 1mxxA, 1mxyA, 1mxzA, 1my0A, 1my1A, 1my2A, 1my3A, 1my4A, 1n0tA, 1nnkA, 1nnpA, 1p1nA, 1p1oA, 1p1qA, 1p1uA, 1p1wA, 1syhA, 1syiA, 1wvjA, 1xhyA, 2aixA, 2al4A, 2al5A, 2anjA, 2cmoA, 2gfeA, 2i3vA, 2i3wA, 2p2aA, 2uxaA, 2xx7A, 2xx8A, 2xx9A, 2xxhA, 2xxiA, 3b6qA, 3b6tA, 3b6wA, 3b7dA, 3bbrA, 3bftA, 3bfuA, 3bkiP, 3dp6A, 3h03A, 3h06G, 3h5vA, 3h5wA, 3h6tA, 3h6uA, 3h6vA, 3h6wA, 3ijoB, 3ijxB, 3ik6B, 3il1B, 3iltB, 3iluB, 3kg2A, 3kgcA, 3lsfB, 3lslA, 3m3lA, 3n6vA, 3o28A, 3o29A, 3o2aA, 3o2jA, 3o6gA, 3o6hA, 3o6iA, 3pd8A, 3pd9A, 3pmvA, 3pmwA, 3pmxA, 3rtfB, 3rtwB, 3t93B, 3t96B, 3t9hB, 3t9uA, 3t9vA, 3t9xB, 3tdjA, 3tkdA, 3tzaA, 4fatA, 4g8mA, 4gxsB, 4h8jA, 4igtA, 4isuA, 4iy5A, 4iy6A, 4l17A, 4lz5A, 4lz7A, 4lz8A, 4n07A, 4o3aA, 4o3bA, 4o3cA, 4q30B, 4u1oA, 4u1wA, 4u1xA, 4u1yA, 4u1zA, 4u21A, 4u22A, 4u23A, 4u2pA, 4u2qA, 4u2rB, 4u4fA, 4u4gA, 4u4sA, 4u4xA, 4u5bA, 4u5cA, 4u5dA, 4u5eA, 4u5fA, 4uq6A, 4uqjA, 4uqkA.
 
P42262 GRIA2_HUMAN Glutamate receptor 2
2wjwA, 2wjxA, 2xhdA, 3r7xA, 3rn8A, 3rnnA, 3ua8A.
 
Q9Z2W9 GRIA3_MOUSE Glutamate receptor 3
3lswA, 3lsxA.
3.
Q62645 NMDE4_RAT Glutamate receptor ionotropic, NMDA 2D
3oekA, 3oelA, 3oemA, 3oenA, 4jwyA.
4.
P19490 GRIA1_RAT Glutamate receptor 1
3sajA.
5.
Q63226 GRID2_RAT Glutamate receptor ionotropic, delta-2
2v3tA, 2v3uA.
6.
Q00959 NMDE1_RAT Glutamate receptor ionotropic, NMDA 2A
2a5sA, 2a5tB, 4jwxA, 4nf4B, 4nf5B, 4nf6B, 4nf8B.
 
A7XY94 A7XY94_XENLA Ionotropic glutamate receptor subunit NR2B {ECO:0000313|EMBL:ABU84989.1}
4tllB, 4tlmB.
7.
E9P5T5 E9P5T5_ADIVA Glutamate receptor 1 {ECO:0000313|EMBL:ADW94593.1}
4io2A, 4io3A, 4io4A, 4io5A, 4io6A, 4io7A.
8.
Q00960 NMDE2_RAT Glutamate receptor ionotropic, NMDA 2B
3jpwA, 3jpyA, 3qelB, 3qemB, 4pe5B.
 
Q13224 NMDE2_HUMAN Glutamate receptor ionotropic, NMDA 2B
1s11A, 1s2sA.
9.
Q8VHN2 NMD3B_RAT Glutamate receptor ionotropic, NMDA 3B
2rcaA, 2rcbA.
10.
C0KD18 C0KD18_XENLA N-methyl-D-aspartate receptor subunit NR1-8a {ECO:0000313|EMBL:ACN87992.1}
4tllA, 4tlmA.
 
Q05586 NMDZ1_HUMAN Glutamate receptor ionotropic, NMDA 1
2hqwB, 2nr1A, 3byaB.
 
Q91977 Q91977_XENLA NMDA glutamate receptor subunit {ECO:0000313|EMBL:CAA63871.1}
3qekA, 3qelA, 3qemA.
 
P35439 NMDZ1_RAT Glutamate receptor ionotropic, NMDA 1
1pb7A, 1pb8A, 1pb9A, 1pbqA, 1y1mA, 1y1zA, 1y20A, 2a5tA, 3q41A, 4kccA, 4kfqA, 4nf4A, 4nf5A, 4nf6A, 4nf8A, 4pe5A.
11.
Q9R1M7 NMD3A_RAT Glutamate receptor ionotropic, NMDA 3A
2rc7A, 2rc8A, 2rc9A, 4kcdA.

List of Pfam domains

  Pfam code Pfam id Description
PF00060 Lig_chan Ligand-gated ion channel
PF00497 SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
PF01094 ANF_receptor Receptor family ligand binding region
PF10562 CaM_bdg_C0 Calmodulin-binding domain C0 of NMDA receptor NR1 subunit
PF10565 NMDAR2_C N-methyl D-aspartate receptor 2B3 C-terminus
PF10613 Lig_chan-Glu_bd Ligated ion channel L-glutamate- and glycine-binding site
PB002840
PB005894
PB007356
PB011930
PB013750
PB018003
PB018110
PB023976
PB037349
PB291720

 

spacer
spacer