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Pfam domain PF00013

Pfam domain PF00013

Pfam domain:   
  PF00013 - KH domain  

Below is the list of protein structures in the PDB containing Pfam domain PF00013.

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Structures in the PDB containing this domain: 98

  Pfam domain
architecture
UniProt
accession
UniProt id Protein name PDB structures
1.
Q07666 KHDR1_HUMAN KH domain-containing, RNA-binding, signal transduction-associated protein 1
2xa6A, 3qheD.
2.
Q17339 GLD1_CAEEL Female germline-specific tumor suppressor gld-1
2mjhA, 3k6tA, 3kblA, 4jvyA.
3.
Q9YE16 Q9YE16_AERPE Uncharacterized protein
1tuaA.
 
O59282 O59282_PYRHO Putative uncharacterized protein PH1566
2e3uA, 3aevB.
4.
Q9YC02 RRP4_AERPE Exosome complex component Rrp4
2z0sA.
 
O29758 RRP4_ARCFU Exosome complex component Rrp4
2ba0A.
 
Q9UXC4 RRP4_SULSO Exosome complex component Rrp4
2je6I, 2jebI, 3l7zC, 4ba1I, 4ba2I.
5.
Q96PU8 QKI_HUMAN Protein quaking
4jvhA.
 
Q9QYS9 QKI_MOUSE Protein quaking
4dnnA.
 
Q32NN2 QKIA_XENLA Protein quaking-A
2bl5A, 2ymjA.
6.
Q15366 PCBP2_HUMAN Poly(rC)-binding protein 2
2axyA, 2jzxA, 2p2rA, 2pquA, 2py9A.
 
Q15365 PCBP1_HUMAN Poly(rC)-binding protein 1
1wvnA, 1ztgA, 3vkeA.
 
Q9UNW9 NOVA2_HUMAN RNA-binding protein Nova-2
1dtjA, 1ec6A.
 
P51513 NOVA1_HUMAN RNA-binding protein Nova-1
1dt4A, 2annA, 2anrA.
7.
Q58928 Y1533_METJA Uncharacterized KH and PIN-domain containing protein MJ1533
3i8oA.
8.
Q80VL1 TDRKH_MOUSE Tudor and KH domain-containing protein
1we8A.
 
Q9Y2W6 TDRKH_HUMAN Tudor and KH domain-containing protein
2diqA, 3fdrA.
9.
Q06787 FMR1_HUMAN Fragile X mental retardation protein 1
2bkdN, 2fmrA, 2la5B, 2qndA.
10.
P61978 HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K
1j5kA, 1khmA, 1zziA, 1zzjA, 1zzkA.
11.
Q86XN8 MEX3D_HUMAN RNA-binding protein MEX3D
2dgrA.
12.
Q86TM3 DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 (E.C. 3.6.4.13)
3iuyA.
13.
P51116 FXR2_HUMAN Fragile X mental retardation syndrome-related protein 2
3h8zA.
14.
Q15637 SF01_HUMAN Splicing factor 1
1k1gA, 1o0pB, 1opiB, 2m09A, 2m0gA, 4fxwB, 4fxxA.
15.
P51114 FXR1_HUMAN Fragile X mental retardation syndrome-related protein 1
2cpqA, 3kufA, 3o8vA.
16.
Q7JPS0 Q7JPS0_DROSP PSI
2bn5A, 2bn6A.
17.
Q9Y6M1 IF2B2_HUMAN Insulin-like growth factor 2 mRNA-binding protein 2
2cqhA.
18.
Q9NZI8 IF2B1_HUMAN Insulin-like growth factor 2 mRNA-binding protein 1
3krmA.
 
O00425 IF2B3_HUMAN Insulin-like growth factor 2 mRNA-binding protein 3
2e44A.
19.
Q91WJ8 FUBP1_MOUSE Far upstream element-binding protein 1
1x4mA, 1x4nA.
 
Q96AE4 FUBP1_HUMAN Far upstream element-binding protein 1
1j4wA, 2kxhB, 4lijA.
20.
Q92945 FUBP2_HUMAN Far upstream element-binding protein 2
2hh2A, 2hh3A, 2jvzA, 2opuA, 2opvA, 4b8tA.
21.
A7ZS61 PNP_ECO24 Polyribonucleotide nucleotidyltransferase (E.C. 2.7.7.8)
3gcmA, 3gllA, 3gmeA.
 
P05055 PNP_ECOLI Polyribonucleotide nucleotidyltransferase (E.C. 2.7.7.8)
1sroA, 3cdiA, 3cdjA, 3h1cA.
 
Q8K1R3 PNPT1_MOUSE Polyribonucleotide nucleotidyltransferase 1, mitochondrial (E.C. 2.7.7.8)
1whuA.
 
Q8TCS8 PNPT1_HUMAN Polyribonucleotide nucleotidyltransferase 1, mitochondrial (E.C. 2.7.7.8)
3u1kA.
 
Q53597 PNP_STRAT Polyribonucleotide nucleotidyltransferase (E.C. 2.7.7.8)
1e3hA, 1e3pA.
 
Q9AC32 PNP_CAUCR Polyribonucleotide nucleotidyltransferase (E.C. 2.7.7.8)
4aidA, 4aimA, 4am3A.
 
Q8DWB2 PNP_STRMU Polyribonucleotide nucleotidyltransferase (E.C. 2.7.7.8)
3h36A.
22.
Q00341 VIGLN_HUMAN Vigilin
1vigA, 1vihA, 2cteA, 2ctfA, 2ctjA, 2ctkA, 2ctlA, 2ctmA.

List of Pfam domains

  Pfam code Pfam id Description
PF00013 KH_1 KH domain
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PF00098 zf-CCHC Zinc knuckle
PF00270 DEAD DEAD/DEAH box helicase
PF00271 Helicase_C Helicase conserved C-terminal domain
PF00437 T2SE Type II/IV secretion system protein
PF00567 TUDOR Tudor domain
PF00575 S1 S1 RNA binding domain
PF01138 RNase_PH 3' exoribonuclease family, domain 1
PF01850 PIN PIN domain
PF03725 RNase_PH_C 3' exoribonuclease family, domain 2
PF03726 PNPase Polyribonucleotide nucleotidyltransferase, RNA binding domain
PF05641 Agenet Agenet domain
PF08067 ROKNT ROKNT (NUC014) domain
PF09005 DUF1897 Domain of unknown function (DUF1897)
PF12235 FXR1P_C Fragile X-related 1 protein C terminal
PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
PF14259 RRM_6 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
PB000555
PB000653
PB005943
PB006703
PB011254
PB013340
PB015352
PB016866
PB018575
PB019308
PB019713
PB102303
PB111440
PB305528
PB320145

 

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