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Pfam domain PF00004

Pfam domain PF00004

Pfam domain:   
  PF00004 - ATPase family associated with various cellular activities (AAA)  

Below is the list of protein structures in the PDB containing Pfam domain PF00004.

+/- Key to table

Structures in the PDB containing this domain: 233

  Pfam domain
architecture
UniProt
accession
UniProt id Protein name PDB structures
1.
Q63570 PRS6B_RAT 26S protease regulatory subunit 6B
2dwzB.
 
P33298 PRS6B_YEAST 26S protease regulatory subunit 6B homolog
2dznB, 2dzoB, 4b4tK, 4bgrK, 4c0vK, 4cr2K, 4cr3K, 4cr4K.
 
P54775 PRS6B_MOUSE 26S protease regulatory subunit 6B
3ajiB.
 
P40327 PRS4_YEAST 26S protease regulatory subunit 4 homolog
4b4tI, 4bgrI, 4c0vI, 4cr2I, 4cr3I, 4cr4I.
 
Q40460 RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic
3t15A, 3zw6A.
 
P04526 DPA44_BPT4 DNA polymerase accessory protein 44
3u5zB, 3u60B, 3u61B.
 
Q58576 PAN_METJA Proteasome-activating nucleotidase
3h43A, 3h4mA.
 
P53549 PRS10_YEAST 26S protease subunit RPT4
4b4tL, 4bgrL, 4c0vL, 4cr2L, 4cr3L, 4cr4L.
 
P33297 PRS6A_YEAST 26S protease regulatory subunit 6A
3whkA, 3whlA, 4b4tM, 4bgrM, 4c0vM, 4cr2M, 4cr3M, 4cr4M.
 
Q01939 PRS8_YEAST 26S protease regulatory subunit 8 homolog
4b4tJ, 4bgrJ, 4c0vJ, 4cr2J, 4cr3J, 4cr4J.
 
Q8U4H3 PAN_PYRFU Proteasome-activating nucleotidase
3whkA, 3whlA.
 
P62195 PRS8_HUMAN 26S protease regulatory subunit 8
2krkA, 3kw6A.
 
P43686 PRS6B_HUMAN 26S protease regulatory subunit 6B
2dvwB.
 
O28303 PAN_ARCFU Proteasome-activating nucleotidase
2wg5A, 2wg6A.
 
Q7X9A0 RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic
3thgA.
2.
O16299 FIGL1_CAEEL Fidgetin-like protein 1 (E.C. 3.6.4.-)
4l15A, 4l16A.
3.
P95648 CBBX_RHOSH Protein CbbX
3sykA, 3sylA, 3zuhA.
4.
P33299 PRS7_YEAST 26S protease regulatory subunit 7 homolog
3vlfB, 4a3vB, 4b4tH, 4bgrH, 4c0vH, 4cr2H, 4cr3H, 4cr4H, 4jpoC.
5.
Q56313 RUVB_THEMA Holliday junction ATP-dependent DNA helicase RuvB (E.C. 3.6.4.12)
1in4A, 1in5A, 1in6A, 1in7A, 1in8A, 1j7kA.
6.
O28219 RFCS_ARCFU Replication factor C small subunit
2chgA, 2chqA, 2chvA.
 
P40339 RFC4_YEAST Replication factor C subunit 4
1sxjB.
 
P38629 RFC3_YEAST Replication factor C subunit 3
1sxjC.
 
P40937 RFC5_HUMAN Replication factor C subunit 5
1lfsA.
 
P40348 RFC2_YEAST Replication factor C subunit 2
1sxjD.
7.
Q3XY27 Q3XY27_ENTFC AAA ATPase, central region
2qw6A, 2r9gA.
 
C6EI90 C6EI90_ECOBD AAA ATPase central domain protein
3pvsA.
 
Q96S55 WRIP1_HUMAN ATPase WRNIP1 (E.C. 3.6.1.3)
3vhsA, 3vhtB.
8.
Q9UBP0 SPAST_HUMAN Spastin (E.C. 3.6.4.3)
3eabA, 3vfdA.
9.
O50202 ARC_RHOER Proteasome-associated ATPase
2wfwA.
10.
Q9WV86 KTNA1_MOUSE Katanin p60 ATPase-containing subunit A1 (E.C. 3.6.4.3)
2rpaA.
11.
P71408 FTSH_HELPY ATP-dependent zinc metalloprotease FtsH (E.C. 3.4.24.-)
2r62A, 2r65A.
12.
Q9DBY8 NVL_MOUSE Nuclear valosin-containing protein-like
2rreA.
 
O15381 NVL_HUMAN Nuclear valosin-containing protein-like
2x8aA.
13.
P54784 ORC1_YEAST Origin recognition complex subunit 1
1m4zA, 1zbxA, 1zhiA.
14.
Q8I0P1 SPAST_DROME Spastin (E.C. 3.6.4.3)
3b9pA.
15.
P0A6H5 HSLU_ECOLI ATP-dependent protease ATPase subunit HslU
1do0A, 1do2A, 1e94E, 1g4aE, 1g4bE, 1hqyE, 1ht1E, 1ht2E, 1yyfA.
 
P43773 HSLU_HAEIN ATP-dependent protease ATPase subunit HslU
1g3iA, 1g41A, 1im2A, 1kyiA, 1ofiA.
16.
P38630 RFC1_YEAST Replication factor C subunit 1
1sxjA.
17.
P36776 LONM_HUMAN Lon protease homolog, mitochondrial (E.C. 3.4.21.-)
2x36B.
 
P37945 LON1_BACSU Lon protease 1 (E.C. 3.4.21.53)
1x37A, 3m65A, 3m6aA.
 
Q84FG5 Q84FG5_9BACL Lon protease (E.C. 3.4.21.53)
4gitA.
 
P0A9M0 LON_ECOLI Lon protease (E.C. 3.4.21.53)
1qzmA, 1rr9A, 1rreA, 2aneA, 3ljcA.
18.
Q97ZJ7 Q97ZJ7_SULSO AAA family ATPase, p60 katanin
4lgmA.
 
P46467 VPS4B_MOUSE Vacuolar protein sorting-associated protein 4B (E.C. 3.6.4.6)
2zamA, 2zanA, 2zaoA.
 
F4B4B0 F4B4B0_ACIHW Cell division protein CdvC, Vps4
4lcbA.
 
O75351 VPS4B_HUMAN Vacuolar protein sorting-associated protein 4B (E.C. 3.6.4.6)
1wr0A, 1xwiA, 2cptA, 2jqhA, 2jqkA.
 
Q9UN37 VPS4A_HUMAN Vacuolar protein sorting-associated protein 4A (E.C. 3.6.4.6)
1yxrA, 2jq9A, 2k3wA.
 
P52917 VPS4_YEAST Vacuolar protein sorting-associated protein 4
2qp9X, 2qpaA, 2rkoA, 2v6xA, 3eieA, 3eihA, 3mhvC, 4niqA.
19.
P0AAI3 FTSH_ECOLI ATP-dependent zinc metalloprotease FtsH (E.C. 3.4.24.-)
1lv7A.
 
O67077 FTSH_AQUAE ATP-dependent zinc metalloprotease FtsH (E.C. 3.4.24.-)
2di4A.
 
Q9WZ49 FTSH_THEMA ATP-dependent zinc metalloprotease FtsH (E.C. 3.4.24.-)
3kdsE.
 
Q5SI82 FTSH_THET8 ATP-dependent zinc metalloprotease FtsH (E.C. 3.4.24.-)
1ixzA, 1iy0A, 1iy1A, 2dhrA, 4eiwA.
20.
Q9ULI0 ATD2B_HUMAN ATPase family AAA domain-containing protein 2B (E.C. 3.6.1.3)
2dkwA, 3lxjA.
21.
Q9UQ90 SPG7_HUMAN Paraplegin (E.C. 3.4.24.-)
2qz4A.
22.
P35251 RFC1_HUMAN Replication factor C subunit 1
2ebuA, 2k6gA, 2k7fA.
23.
Q9Y4W6 AFG32_HUMAN AFG3-like protein 2 (E.C. 3.4.24.-)
2lnaA.
24.
P18708 NSF_CRIGR Vesicle-fusing ATPase (E.C. 3.6.4.6)
1d2nA, 1nsfA, 1qcsA, 1qdnA.
 
P18759 SEC18_YEAST Vesicular-fusion protein SEC18
1cr5A.
 
O05209 VAT_THEAC VCP-like ATPase
1cz4A, 1cz5A.
25.
D3GUW1 D3GUW1_ECO44 Putative type VI secretion protein
4hh5A, 4hh6A.
 
P0ABH9 CLPA_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpA
1k6kA, 1ksfX, 1lzwB, 1mbuA, 1mbvA, 1mg9B, 1r6bX, 1r6cX, 1r6oA, 1r6qA.
 
A1EKV2 A1EKV2_VIBCL ClpB protein
3zriA, 3zrjA.
26.
Q5BL07 PEX1_MOUSE Peroxisome biogenesis factor 1
1wlfA.
27.
Q6PL18 ATAD2_HUMAN ATPase family AAA domain-containing protein 2 (E.C. 3.6.1.3)
3daiA.
28.
Q9Z1N2 ORC1_MOUSE Origin recognition complex subunit 1
4dovA, 4dowA.
29.
P55072 TERA_HUMAN Transitional endoplasmic reticulum ATPase (E.C. 3.6.4.6)
3hu1A, 3hu3A, 3qc8A, 3qq7A, 3qq8A, 3qwzA, 3tiwA, 4kdiA, 4kdlA, 4klnA, 4ko8A, 4kodA.
 
Q01853 TERA_MOUSE Transitional endoplasmic reticulum ATPase (E.C. 3.6.4.6)
1e32A, 1oz4A, 1r7rA, 1s3sA, 1ypwA, 1yq0A, 1yqiA, 2pjhB, 3cf0A, 3cf2A, 3cf3A.
30.
Q9RA63 CLPB_THET8 Chaperone protein ClpB
1qvrA, 4fctA, 4fcvA, 4fcwA, 4fd2A, 4hseA, 4lj4A, 4lj5A, 4lj6A, 4lj7A, 4lj8A, 4lj9A, 4ljaA.
 
Q8IB03 Q8IB03_PLAF7 ClpB protein, putative
2p65A.
 
Q8IIJ8 Q8IIJ8_PLAF7 Heat shock protein 101, putative
4iodB, 4irfA.
 
P63284 CLPB_ECOLI Chaperone protein ClpB
1jbkA, 1khyD, 4ciuA, 4d2qA, 4d2uA, 4d2xA.
31.
P37571 CLPC_BACSU Negative regulator of genetic competence ClpC/MecB
2k77A, 2y1qA, 2y1rA, 3j3rA, 3j3tA, 3pxiA.
 
Q8NMA0 Q8NMA0_CORGL ATPases with chaperone activity, ATP-binding subunit (E.C. 3.-.-.-)
3fh2A.

List of Pfam domains

  Pfam code Pfam id Description
PF00004 AAA ATPase family associated with various cellular activities (AAA)
PF00439 Bromodomain Bromodomain
PF00533 BRCT BRCA1 C Terminus (BRCT) domain
PF01426 BAH BAH domain
PF01434 Peptidase_M41 Peptidase family M41
PF02151 UVR UvrB/uvrC motif
PF02190 LON ATP-dependent protease La (LON) domain
PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
PF02861 Clp_N Clp amino terminal domain
PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
PF04212 MIT MIT (microtubule interacting and transport) domain
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain
PF05491 RuvB_C Holliday junction DNA helicase ruvB C-terminus
PF06480 FtsH_ext FtsH Extracellular
PF07724 AAA_2 AAA domain (Cdc48 subfamily)
PF08519 RFC1 Replication factor RFC1 C terminal domain
PF08542 Rep_fac_C Replication factor C C-terminal domain
PF09079 Cdc6_C CDC6, C terminal
PF09262 PEX-1N Peroxisome biogenesis factor 1, N-terminal
PF09263 PEX-2N Peroxisome biogenesis factor 1, N-terminal
PF09336 Vps4_C Vps4 C terminal oligomerisation domain
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
PF12002 MgsA_C MgsA AAA+ ATPase C terminal
PB002008
PB003039
PB004216
PB010121
PB011064
PB012480
PB012961
PB015651
PB018741
PB019098
PB022089
PB023116
PB036661
PB040477
PB049342
PB057834
PB062585
PB130965
PB320517

 

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