spacer
spacer

PDBsum entry 4m6d

Go to PDB code: 
protein dna_rna Protein-protein interface(s) links
Hydrolase/RNA PDB id
4m6d
Jmol
Contents
Protein chains
(+ 0 more) 129 a.a.
DNA/RNA
Waters ×69
PDB id:
4m6d
Name: Hydrolase/RNA
Title: Crystal structure of the aptamer minf-lysozyme complex.
Structure: LysozymE C. Chain: a, c, e, g, i, k. Synonym: 1,4-beta-n-acetylmuramidasE C, allergen gal d iv. Engineered: yes. Aptamer. Chain: b, d, f, h, j, l. Engineered: yes
Source: Gallus gallus. Bantam,chickens. Organism_taxid: 9031. Gene: lyz, lyz1. Expressed in: escherichia coli. Expression_system_taxid: 469008. Synthetic: yes. Other_details: minf
Resolution:
2.68Å     R-factor:   0.168     R-free:   0.216
Authors: V.N.Malashkevich,F.C..Padlan,R.Toro,M.Girvin,S.C.Almo,New Yo Structural Genomics Research Consortium (Nysgrc)
Key ref: V.N.Malashkevich et al. Crystal structure of the aptamer minf-Lysozyme comple. To be published, .
Date:
09-Aug-13     Release date:   11-Dec-13    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P00698  (LYSC_CHICK) -  Lysozyme C
Seq:
Struc:
147 a.a.
129 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.3.2.1.17  - Lysozyme.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: Hydrolysis of the 1,4-beta-linkages between N-acetyl-D-glucosamine and N-acetylmuramic acid in peptidoglycan heteropolymers of the prokaryotes cell walls.
 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     extracellular region   3 terms 
  Biological process     metabolic process   5 terms 
  Biochemical function     catalytic activity     6 terms