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Index of all ligands in the PDB

 1 

1 . .

Part
code
10.
11.
12.
13.
14.
15.
16.
17.
18.
19.
1A.
1B.
1C.
1D.
1E.
1F.
1G.
1H.
1I.
1J.
1K.
1L.
1M.
1N.
1O.
1P.
1Q.
1R.
1S.
1T.
1U.
1V.
1W.
1X.
1Y.
1Z.
Ligand Description No. of PDB
entries
130   2-(2-Hydroxy-Biphenyl)-1h-Benzoimidazole-5-Carboxamidine   3
132   6-Chloro-2-(2-Hydroxy-Biphenyl-3-Yl)-1h-Indole-5-Carboxamidine   4
133   6-Fluoro-2-(2-Hydroxy-3-Isobutoxy-Phenyl)-1h-Benzoimidazole-5-Carboxamidine   1
134   6-Fluoro-2-[2-Hydroxy-3-(2-Methyl-Cyclohexyloxy)-Phenyl]-1h-Indole-5-Carboxamidine   1
135   N-(4-Carbamimidoyl-Phenyl)-2-Hydroxy-Benzamide   1
136   N-(4-Carbamimidoyl-3-Choro-Phenyl)-2-Hydroxy-3-Iodo-5-Methyl-Benzamide   1
137   1-(O-Carboxy-Phenylamino)-1-Deoxy-D-Ribulose-5-Phosphate   5
138   N-[5'-O-Phosphono-Ribofuranosyl]-2-[2-Hydroxy-2-[4-[Glutamic acid]-N-Carbonylphenyl]-3-[2-Amino-4-
Hydroxy-Quinazolin-6-Yl]-Propanylamino]-Acetamide
  1
139   Adenosine-5'-[Trihydrogen diphosphate] p'-3'-Ester with 2'-Deoxyuridine   1
13A   7-(3,4-Dihydroxy-5r-Hydroxymethyltetrahydrofuran-2-Yl)-2,2-Dioxo-1,2r,3r,7-Tetrahydro-2l6-
Imidazo[4,5-C][1,2,6]thiadiazin-4s-One
  1
13C   (5e)-13-Chloro-14,16-Dihydroxy-3,4,7,8,9,10-Hexahydro-2-Benzazacyclotetradecine-1,11(2h,12h)-Dione   1
13D   1,3-Diaminopropane   3
13F   3-Methyl-2-Oxo-N-Phenyl-1,2,3,4-Tetrahydroquinazoline-6-Sulfonamide   1
13I   (E)-Ethyl 13-Chloro-14,16-Dihydroxy-1,11-Dioxo-1,2,3,4,7,8,9,10,11,12-
Decahydrobenzo[c][1]azacyclotetradecine-10-Carboxylate
  1
13J   3-{4-Amino-1-[(3s)-1-Propanoylpiperidin-3-Yl]-1h-Pyrazolo[3,4-D]pyrimidin-3-Yl}-N-[4-(Propan-2-
Yl)phenyl]benzamide
  1
13K   N~6~-(3,4-Dimethoxyphenyl)-2-(Morpholin-4-Yl)-4,5'-Bipyrimidine-2',6-Diamine   1
13L   3-{4-Amino-1-[(3r)-1-Propanoylpiperidin-3-Yl]-1h-Pyrazolo[3,4-D]pyrimidin-3-Yl}-N-[4-(Propan-2-
Yl)phenyl]benzamide
  1
13M   (2s)-2-(4-Methoxy-3-{[(Pyren-1-Ylcarbonyl)amino]methyl}benzyl)butanoic acid   1
13N   (5e,10r)-N-Benzyl-13-Chloro-14,16-Dihydroxy-1,11-Dioxo-1,2,3,4,7,8,9,10,11,12-Decahydro-2-
Benzazacyclotetradecine-10-Carboxamide
  1
13P   1,3-Dihydroxyacetonephosphate   32
13Q   [(3r,5r,6s)-5-(3-Chlorophenyl)-6-(4-Chlorophenyl)-1-(Cyclopropylmethyl)-2-Oxopiperidin-3-
Yl]acetic acid
  1
13R   13(r)-Hydroperoxy-9(z),11(e)-Octadecadienoic acid   1
13S   13(s)-Hydroperoxy-9(z),11(e)-Octadecadienoic acid   1
13T   13-Deoxytedanolide   1
13U   N-Cyclooctylglycyl-N-(4-Carbamimidoylbenzyl)-L-Prolinamide   2
13V   4-{3-[2-Amino-5-(2-Methoxyethoxy)pyrimidin-4-Yl]-1h-Indol-5-Yl}-2-Methylbut-3-Yn-2-Ol   1
13W   3-{5-[(2e,4s)-2-Imino-1,4-Dimethyl-6-Oxohexahydropyrimidin-4-Yl]thiophen-3-Yl}benzonitrile   1
13X   Benzene-1,3,5-Triol   1
13Y   2-(3-Chlorophenoxy)-4-{(1r)-3-Methyl-1-[(3s)-3-(5-Methyl-2,4-Dioxo-3,4-Dihydropyrimidin-1(2h)-
Yl)piperidin-1-Yl]butyl}benzoic acid
  1
13Z   2-[(2-{(2s,4s)-2-[(R)-(5-Tert-Butyl-1,3,4-Oxadiazol-2-Yl)(hydroxy)methyl]-4-Fluoropyrrolidin-1-Yl}-
2-Oxoethyl)amino]-2-Methylpropan-1-Ol
  1

Above is a listing of ligands in PDB beginning with the letter 1 and part-code 13. The column on the right shows the number of PDB entries containing the given ligand. Other part-codes for this letter are listed in the index on the left.

You can use the index at the top to get to ligands starting with different letters. A drop-down menu gives you access to any given part-code. Alternatively use the search box at top right to search for codes or names.

Note that leading spaces in ligand names (or in names of Het Groups within ligands) are replaced by an underscore, "_". The page labelled "_" on the far right of the index at the top includes all the metal ligands.

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