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Index of all ligands in the PDB

 B 

B . .

Part
code
B0.
B1.
B2.
B3.
B4.
B5.
B6.
B7.
B8.
B9.
BA.
BB.
BC.
BD.
BE.
BF.
BG.
BH.
BI.
BJ.
BK.
BL.
BM.
BN.
BO.
BP.
BQ.
BR.
BS.
BT.
BU.
BV.
BW.
BX.
BY.
BZ.
Ligand Description No. of PDB
entries
BD0   (1s,2r)-1-[(5-Chloro-2,4-Dihydroxyphenyl)carbonyl]-2-{4-[(3,3-Difluoropyrrolidin-1-
Yl)methyl]phenyl}pyrrolidinium
  1
BD1   3a,4,7,7a-Tetrahydro-Benzo [1,3] dioxol-2-One   1
BD2   3-[(4-Hydroxybenzoyl)amino]azepan-4-Yl 4-(2-Hydroxybenzoyl)benzoate   1
BD3   Nalpha-[(3-Tert-Butyl-1-Methyl-1h-Pyrazol-5-Yl)carbonyl]-N-[(2e)-2-Iminoethyl]-3-{5-[(Z)-
Iminomethyl]-1,3,4-Oxadiazol-2-Yl}-L-Phenylalaninamide
  1
BD4   6-(3-Aminopropyl)-4,9-Dimethylpyrrolo[3,4-C]carbazole-1,3(2h,6h)-Dione   1
BD5   N-[(Benzyloxy)carbonyl]-D-Tyrosyl-L-Phenylalanyl-L-Tyrosine   1
BD6   N-[(Benzyloxy)carbonyl]-L-Histidyl-N-Methyl-L-Phenylalanyl-N-Hydroxy-L-Tryptophanamide   1
BD7   N-[(Benzyloxy)carbonyl]-L-Histidyl-N-Methyl-L-Phenylalanyl-N-Hydroxy-L-Tyrosinamide   1
BD8   N-Undecanoyl-L-Histidyl-L-Phenylalanyl-N-Methyl-N-(2-Pyridin-2-Ylethyl)-L-Tyrosinamide   1
BD9   N-Undecanoyl-L-Histidyl-L-Histidyl-N-Methyl-N-(2-Pyridin-2-Ylethyl)-L-Tyrosinamide   1
BDA   4-Methylbenzyl-N-Bis[daunomycin]   2
BDB   4,4'-Biphenyldiboronic acid   1
BDC   Bis-(9-Octylamino(2-Dimethylaminoethyl)acridine-4-Carboxamide   1
BDD   Bromo-Dodecanol   2
BDE   N'-[(1e)-(3,5-Dibromo-2,4-Dihydroxyphenyl)methylene]nicotinohydrazide   1
BDF   Beta-D-Fructopyranose   3
BDG-CYY-BDR-IDG   BDG=O-2,6-Diamino-2,6-Dideoxy-Alpha-D-Glucopyranose, CYY=2-Deoxystreptamine, BDR=Beta-D-Ribofuranosyl, IDG=O-2,6-Diamino-2,6-Dideoxy-Beta-L-Idopyranose.   1
BDG-PA2-P24-42B   BDG=O-2,6-Diamino-2,6-Dideoxy-Alpha-D-Glucopyranose, PA2=Paromomycin (ring 2), P24=1-(Aminoethyl)amino-4-Aminobutane, 42B=4-Amino-2-Hydroxybutanoic acid.   1
BDH   L-Beta-Aspartylhistidine   1
BDI   2-Butyl-5,6-Dihydro-1h-Imidazo[4,5-D]pyridazine-4,7-Dione   2
BDJ   (2z)-3-(3-Chlorobenzyl)-2-Imino-5,5-Dimethylimidazolidin-4-One   1
BDK   2-[5-Amino-6-Oxo-2-(2-Thienyl)-1,6-Dihydropyrimidin-1-Yl)-N-[3,3-Difluoro -1-Isopropyl-2-Oxo-3-(N-
(2-Morpholino ethyl)carbamoyl]propyl]acetamide
  1
BDL   N-(Biphenyl-4-Ylsulfonyl)-D-Leucine   1
BDM   Brodimoprim-4,6-Dicarboxylate   2
BDO   (2z,5r)-3-(3-Chlorobenzyl)-2-Imino-5-Methyl-5-(2-Methylpropyl)imidazolidin-4-One   1
BDP   Beta-D-Glucopyranuronic acid   14
BDP-ASG-BDP-ASG-
BDP-ASG
  BDP=Beta-D-Glucopyranuronic acid, ASG=2-Deoxy-2-Acetamido-Beta-D-Galactose-4-Sulfate.   2
BDP-GAL   BDP=Beta-D-Glucopyranuronic acid, GAL=Beta-D-Galactose.   1
BDP-NAG-BDP-NAG   BDP=Beta-D-Glucopyranuronic acid, NAG=N-Acetyl-D-Glucosamine.   1
BDP-NDG-BDP-GNS-
IDR-GNS-BDP
  BDP=Beta-D-Glucopyranuronic acid, NDG=2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose, GNS=N-Sulfo-Alpha-D-Glucosamine, IDR=L-Iduronic acid.   1
BDP-NDG-BDP-GNS-
IDR-GNS-BDP-NPO
  BDP=Beta-D-Glucopyranuronic acid, NDG=2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose, GNS=N-Sulfo-Alpha-D-Glucosamine, IDR=L-Iduronic acid, NPO=P-Nitrophenol.   1
BDP-NGA-GC1   BDP=Beta-D-Glucopyranuronic acid, NGA=N-Acetyl-D-Galactosamine, GC1=2,6-Anhydro-L-Gulonic acid.   1
BDQ   1-(4-Cyanophenyl)-3-(4-{[(2z,4r)-2-Imino-4-Methyl-4-(2-Methylpropyl)-5-Oxoimidazolidin-1-
Yl]methyl}benzyl)urea
  1
BDR   Beta-D-Ribofuranosyl   3
BDR-IDG-BDG-NEB   BDR=Beta-D-Ribofuranosyl, IDG=O-2,6-Diamino-2,6-Dideoxy-Beta-L-Idopyranose, BDG=O-2,6-Diamino-2,6-Dideoxy-Alpha-D-Glucopyranose, NEB=2-Deoxy-D-Streptamine.   1
BDS   2,3-Bis-Benzo[1,3]dioxol-5-Ylmethyl-Succinic acid   1
BDT   5-Beta-Dihydrotestosterone   2
BDU   Me-A-9-N-(Biphenyl-4-Carbonyl)-Amino-9-Deoxy-Neu5ac   1
BDV   1-Butyl-3-(4-{[(2z,4r)-2-Imino-4-Methyl-4-(2-Methylpropyl)-5-Oxoimidazolidin-1-Yl]methyl}benzyl)urea   1
BDW   (4s)-1-(4-{[(2z,4r)-4-(2-Cyclohexylethyl)-4-(Cyclohexylmethyl)-2-Imino-5-Oxoimidazolidin-1-
Yl]methyl}benzyl)-4-Propylimidazolidin-2-One
  1
BDX   (2e,5r)-5-(2-Cyclohexylethyl)-5-(Cyclohexylmethyl)-2-Imino-3-Methylimidazolidin-4-One   1
BDY   N~3~-(2,6-Dichlorobenzyl)-5-(4-{[(2r)-2-(Pyrrolidin-1-Ylmethyl)pyrrolidin-1-
Yl]carbonyl}phenyl)pyrazine-2,3-Diamine
  1
BDZ   6-Deoxy-Alpha-L-Galactopyranosyl-(1->3)-[6-Deoxy-Alpha-L-Galactopyranosyl-(1->2)-Beta-D-
Galactopyranosyl-(1->4)]-2-(Acetylamino)-2-Deoxy-Beta-D-Glucopyranose
  2

Above is a listing of ligands in PDB beginning with the letter B and part-code BD. The column on the right shows the number of PDB entries containing the given ligand. Other part-codes for this letter are listed in the index on the left.

You can use the index at the top to get to ligands starting with different letters. A drop-down menu gives you access to any given part-code. Alternatively use the search box at top right to search for codes or names.

Note that leading spaces in ligand names (or in names of Het Groups within ligands) are replaced by an underscore, "_". The page labelled "_" on the far right of the index at the top includes all the metal ligands.

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