Documentation
  Details for match to template TMP00032

Details for match to template TMP00032

Template match. The template is shown with the smaller atoms and bonds; the larger atoms and bonds correspond to the matching coordinates in your structure. These are labelled with atom and residue names.
Note that, if the match is a particularly good one (ie with a small r.m.s.d.) the atoms and bonds from the template may be obscured by those from the actual structure.
Hit 9. Template: TMP00032
Similarity score: 479.81 E-value: 5.19E-11
 
Matched PDB entry: 1u8z Crystal structures of ral-gppnhp and ral-gdp reveal two novel binding sites that are also present in ras and rap
 
Matched residues: Lys16(A), Asp65(A), Ile66(A).
Template residues: Lys5(A), Asp54(A), Ile55(A).
RMSD: 1.37Å (17 atoms)
Matched residues: 22 identical / 9 similar
No. of equivalenced residues: 29
Local sequence identity: 62.86%
 
RasMol View match in RasMol

Alignment

The sequence alignment shown below has been driven by the residues equivalenced by the template match. So if the match is a nonsensical one, the alignment may be meaningless (eg with many gaps and insertions).

Description of alignment Key to alignment
RasMol
View in
RasMol
View PS file
1

Alignment statistics
 Length of 
 query seq 
 Length of 
 target seq 
 Over- 
 lap 
 %-tage 
 seq id 
 Structural 
 similarity* 
 Longest 
 continuous 
 segment 
 Total 
 residues 
 fitted§ 
 Rmsd of 
 fit (Å) 
166 165 167 52.73% 99.4% 162 162 1.18
* The structural similarity shows the percentage of all residues that lie in 'fittable' segments. A segment is fittable if it consists of at least 7 consecutive residues which, when structurally superposed on equivalent C-alpha positions, give an rmsd of <3.0Å. The fittable segments are shown by the blue bars in the alignment. The longest such segment is shown by a red bar and, in this case is 162 residues long.
§ This gives the number of residue pairs from the two structures that can be superposed on the C-alpha atoms to give an rmsd of < 3.0Å.