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PDBsum entry 7apf

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 7apf calculated with MOLE 2.0 PDB id
7apf
Pores calculated on whole structure Pores calculated excluding ligands

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3 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.46 1.59 40.2 -1.97 -0.53 20.6 79 3 7 3 2 2 4 0  EDO 1206 A
2 2.40 2.68 61.6 -2.18 -0.66 27.7 85 5 4 5 3 1 0 0  EDO 1204 A EDO 1205 B
3 2.39 2.67 69.6 -1.48 -0.51 17.2 81 4 4 6 3 1 2 0  EDO 1205 B
4 1.46 1.59 90.7 -1.43 -0.43 17.0 81 5 7 8 4 1 5 0  EDO 1206 A EDO 1205 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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