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PDBsum entry 6zg0

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Pore analysis for: 6zg0 calculated with MOLE 2.0 PDB id
6zg0
Pores calculated on whole structure Pores calculated excluding ligands

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23 pores, coloured by radius 25 pores, coloured by radius 25 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.39 3.56 25.4 -2.41 -0.40 34.6 76 6 5 0 1 2 0 0  BME 801 H
2 3.22 3.37 25.5 -2.10 -0.35 28.7 79 5 3 2 1 2 0 0  BME 802 F
3 3.28 3.46 33.4 -2.55 -0.54 34.5 79 7 5 1 1 2 0 0  BME 801 G
4 3.16 3.34 35.8 -2.51 -0.48 34.4 77 6 7 1 1 2 0 0  BME 802 A
5 1.28 2.36 39.6 -2.26 -0.44 32.6 81 8 5 2 4 1 0 0  BME 802 E
6 2.22 2.30 55.6 -1.99 -0.39 26.4 82 6 4 3 3 1 1 1  BME 801 C
7 2.36 2.36 60.2 -2.00 -0.40 28.1 78 12 5 2 2 3 0 0  BME 802 E
8 1.51 1.74 60.9 -1.93 -0.33 29.6 79 8 7 2 2 2 0 0  EDO 806 D BME 802 E
9 2.39 2.50 62.8 -1.86 -0.42 26.1 80 12 5 3 2 3 0 0  BME 801 G
10 2.43 2.54 64.0 -1.89 -0.41 27.3 81 11 7 4 2 3 0 0  BME 802 F BME 801 G
11 2.74 3.93 65.2 -2.00 -0.35 28.8 80 9 7 3 2 3 0 0  EDO 806 D BME 802 E BME 802 F
12 1.28 2.37 66.5 -1.24 -0.25 21.4 81 12 2 3 6 2 0 0  
13 2.33 2.44 70.9 -1.73 -0.30 24.9 75 12 5 1 2 5 1 2  BME 802 A BME 804 B
14 2.43 2.52 75.7 -1.85 -0.36 25.4 78 12 5 4 2 5 1 1  EDO 801 B PEG 803 B BME 804 B BME 801 C
15 3.15 3.74 84.2 -2.26 -0.39 33.4 77 11 11 0 2 4 0 1  BME 802 A BME 801 H
16 2.49 4.45 98.9 -2.03 -0.42 29.6 80 11 9 3 2 3 0 0  EDO 806 D BME 802 F
17 2.83 4.55 98.6 -2.41 -0.53 33.5 81 12 12 3 2 3 0 0  EDO 806 D BME 802 E BME 801 G
18 2.86 4.60 105.0 -2.16 -0.43 32.1 80 11 11 2 2 3 0 0  BME 802 F
19 2.94 3.45 117.1 -2.43 -0.42 34.7 76 13 14 1 2 5 1 1  BME 804 B BME 801 H
20 2.99 3.69 117.5 -2.42 -0.51 34.6 79 13 14 1 2 4 0 1  BME 802 A BME 801 G
21 2.85 4.61 125.9 -2.34 -0.46 34.7 80 13 16 1 2 3 0 0  EDO 806 D BME 802 E BME 801 H
22 2.14 2.86 144.8 -2.42 -0.46 34.4 78 15 16 2 2 5 1 1  BME 804 B EDO 806 D BME 802 E
23 2.92 3.58 150.4 -2.53 -0.53 35.5 78 15 17 2 2 5 1 1  BME 804 B BME 801 G
24 1.71 1.86 161.6 -2.18 -0.44 29.2 77 12 16 3 4 6 2 0  BME 802 A BME 802 F
25 2.85 4.61 171.1 -2.40 -0.49 34.3 79 14 18 3 2 5 1 1  BME 804 B BME 802 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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