PDBsum entry 6wc6

Tunnel analysis for: 6wc6 calculated with

MOLE 2.0

PDB id

6wc6

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.16

1.21

90.3

-0.97

-0.17

17.4

79

8

7

2

11

3

2

1

FAD 901 A

2

1.39

3.28

32.4

0.09

0.07

11.2

82

2

0

3

10

1

1

0

3

1.37

3.28

33.8

-0.04

0.09

12.3

82

3

1

2

10

2

1

0

4

1.21

1.46

18.1

0.11

0.13

10.2

74

1

1

2

2

3

1

0

5

1.20

1.20

15.1

0.78

0.15

15.2

83

1

2

1

4

0

0

0

6

1.21

3.49

18.8

-1.94

-0.42

23.9

79

2

1

4

2

0

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.